BLACKJACK
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000074 |
|---|---|
| TE superfamily | Blackjack |
| TE class | DNA |
| Species | Eutheria |
| Length | 2969 |
| Kimura value | 25.22 |
| Tau index | 0.9830 |
| Description | hAT DNA transposon, BLACKJACK superfamily |
| Comment | BLACKJACK was active more than 100 million years ago. MER94 is a non- autonomous derivative of BLACKJACK. MER81, which is related to MER91, is a non-autonomous form of a BLACKJACK-like transposon. |
| Sequence |
TAGGGTGACCATACGTCCCGGTTTGCCCGGGACAGTCCCGGTTTACGCCTGTTGTCCCGGCGTCCCGTCCGGTTTAGCATTTGTCCCGGATTTTTCATTTTTTAACGAAGTATTATTATTAATAGTTGCATTAAAATAAGCCGGGATGGGTTTGGTAGACCTCCACTTTGTACTTCCAGCTTCTGCCATGGTCTCGTCTAGTAGTGTGTGAGACGCATGTGCAGTGAACAGAGTTCTCACTTTAACACGTGGTTAAATCTGAAAGACGACCAGCGATAACCCGTCTCTCTTTTCCCGACCCTTTCCAGACGCAACGTAACTAACACCTCCCTTTCAAGGACAGCATGCAGGGCGCTCGCTGATAAAACGAAGTGCGCTCGGACACGAGCGGCTAGGGACAGCTAACTCCTTCCGGTCTCGGGTGGTGGTGGGAGAAGTATTCGACGCTGCTGCCCCTGCCGGCCACTTGGTGTACCAGCCAGTTGTGCCGTGGCCCGTGCCGCGGCCTGCGAGATGCACGAAGCCGCCAGGCCGCCAGTCGGCGGGGTCAGTGGGAAACGTGGGAAATTATAGGTTAGGTGTACGTGAAATATGTGCGGGAAATAGAGGCTGAGCAGTCCTGCCGTAGAGCGTATAGAGAGTAGTCTGAACGCTCTTGCTACAGTGGTTTTGTCATTTATTGTATGGTGTAAATCTACAACTATTTATTTTATTGTTTGGTAATGCTTTTTTATTTTGCAATAAACCCTTTCGGCAGCAATGAGCTCAAAAAAACGAAAGTGCATGTTTAATGAAAAATTAAGTACTGAATTTCCGTTTCTCAAGAAAGTTGATGATGAACGTGTAACTTGCACAAAATGTTTGTCGACATTTACCATCCACCATGGGGGCCGTAGTGATATCACTGACCACATGAAAACCAGAAGACACAAATCTGCTGAAGAAGCATCAGCATCTACTTCAAAAGTTAGTAGTTATTTTAAGAAGACTGTGCCCGAAGACGACGATTTAACACGTGCAGCTGCAGAAGGTGCGTTTACATATCACTCTGTGAAGCATGACTTTTCATTTAGATCAAATGACTGTTCTTCTAAATTAATTTCGCTCATTTTCGATTCCAAGTTTTCTTGTGCACGTACGAAAAGTGAAGCGATAGCTGTTAATGTGTTGGCTCCATTAGCAGAAGAACTTCGCAAACAGTTAAATGATGCCAGTTTTATATCAGTGTCATCAGATGCTTCAAATAGAAAATCAGTTAAGTTAATTCCAATAATGGTTCGATTTTTTCATCCAATTCATGGAATCAAAGTAAAGCTTTTGGAAGTTCATTCTGTCGAAGGTGAAACATCTGACATTATTGTGAATGCTATTGTAAATTCAGTTAAAAAGTTCAACATTGAAGATAAAATTATTTGTTTTTGCGGTGATAATACGAATACAAATTTTGGTGGAGCACAGCGTCGTGGTAAAAACAATGTTCTTACTAAATTAAGAAACCTATGGAGCAGAAATGTACTTGGAATTGGTTGTGGTGCACACATAATTCATAATTGCGTCCAAACAAGCTGCGATATTCTACCAATCGAAATAGAAGCTGTAGTTGTCAAAATTTACAAATATTTTTATATATACACAGTTAGAGTAACTGAACTACAAAATTTTTGTGACGAAGCTGATGTTGAATACAAAAAAATACTTCAGCATGGCAGTACGCGCTTTCTCTCTTTGCTGCCCGTCATCAATCGGATTTTAGAAATGTTTGAGCCTTTGAAGAACTACTTTGTAAATCAACCTAAGTGTCCTACAATGGTATTGAACTTTTTTGTAAACGAGTCCTCTAAATTTTGGTTGCATTTTGTTCAAAATCAGTTGGAAATCTTTAATCAAAGTATTCAACGAATGGAGCGCCAAAAAACTTCAGCTTTTGAAGCTTTTAGCGAATTGCAATTATTGAAAACAAAGCTTGCAAACAGGAAGACATTGAAATTTATCCCTACAAAAGCAAGGGAGGAACTGAACAAATTAAACGATGAGAGCTCAAACGGTGTACAAGATTTAATTTTGAAATTCTATAATTGCGCTTTGGAATATCTCGACTTGTGGGAAGAATCTTTTGATGGAGCTCCTATTTTTAATTGGATAAATTTATATTCTGTACCGGAATGGAATGAAATTGAGAAGGCCTACGATTTTGCAGCATCTAAATTTGGCGAAACATTCAAAAGAATCATAAATAGAGACAACTTATTTGACGAGTTTTGTCTTGTAAAAATATTTGTCGAAGAAAGGTACTCTGAATGGAGGCAAAAAGACAGTACCTGTGAAAATATTTGGGCTGAAATATTTACACATTTCAATATAAAAAAAATTAGAATTGAGAATATCCTCCATTTAGCAGAATTTGCTCTGAGCTTACCAGGTACCTCAGCACCTGTAGAGAGAGTATTTTCTCAATTAAAAATATTATGGTCTACAGAGAAGAGTCAATTGAAGGTGTCAACAATTTCAAATTTATTAACCATAAAATGCAACTTTGAAGAAGATTGCAGGCAATTTTATGAAAAAATTAAAAATAATAAGACCATATTGAAAAAATACATTCTTCAGAAAAATACCAGTGACACGGTATTAGAGACAGATACGGCTAAGAAACTGATTAAAGTACGTGAATATGTACCAAGAATAATTATTCTGCTTATGTTATTTTTAATGTTCAGATAATCAATATAAAATTTTTTAAAATTTTGCTTTAATGTACACGGATATATATTTTTATTTTTTAGAAAGAATTTTATTTTTGAAAATAGTTTTTGAATAGAACTATTTTATAGGTCCACCAATATAATAAAACCAATTTGTCGGTCAATAAATAAATATTTCAAAAAATTATATAATTTTAATTATTTTTAGCGCCCCCTTTCACTCTCAAAAGTGTCCCGGTTTGGACGATAAATTATATGGTCACCCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| BLACKJACK | ERF::FOXO1 | 1966 | 1977 | + | 15.53 | GCAAACAGGAAG |
| BLACKJACK | FOXO1::FLI1 | 1966 | 1978 | + | 15.53 | GCAAACAGGAAGA |
| BLACKJACK | ZNF766 | 1491 | 1499 | + | 15.50 | AAGAAACCT |
| BLACKJACK | IDD6 | 667 | 682 | + | 15.47 | GTTTTGTCATTTATTG |
| BLACKJACK | IDD6 | 667 | 682 | + | 15.43 | GTTTTGTCATTTATTG |
| BLACKJACK | STB3 | 2586 | 2596 | - | 15.30 | ATTTTTTCAAT |
| BLACKJACK | ETV2::FOXI1 | 1968 | 1978 | + | 15.29 | AAACAGGAAGA |
| BLACKJACK | ZNF549 | 1727 | 1734 | + | 15.24 | TGCTGCCC |
| BLACKJACK | ZNF549 | 448 | 455 | + | 15.24 | TGCTGCCC |
| BLACKJACK | ZHD6 | 2897 | 2908 | - | 15.24 | AAAAATAATTAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
