BLACKJACK
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000074 |
|---|---|
| TE superfamily | Blackjack |
| TE class | DNA |
| Species | Eutheria |
| Length | 2969 |
| Kimura value | 25.22 |
| Tau index | 0.9830 |
| Description | hAT DNA transposon, BLACKJACK superfamily |
| Comment | BLACKJACK was active more than 100 million years ago. MER94 is a non- autonomous derivative of BLACKJACK. MER81, which is related to MER91, is a non-autonomous form of a BLACKJACK-like transposon. |
| Sequence |
TAGGGTGACCATACGTCCCGGTTTGCCCGGGACAGTCCCGGTTTACGCCTGTTGTCCCGGCGTCCCGTCCGGTTTAGCATTTGTCCCGGATTTTTCATTTTTTAACGAAGTATTATTATTAATAGTTGCATTAAAATAAGCCGGGATGGGTTTGGTAGACCTCCACTTTGTACTTCCAGCTTCTGCCATGGTCTCGTCTAGTAGTGTGTGAGACGCATGTGCAGTGAACAGAGTTCTCACTTTAACACGTGGTTAAATCTGAAAGACGACCAGCGATAACCCGTCTCTCTTTTCCCGACCCTTTCCAGACGCAACGTAACTAACACCTCCCTTTCAAGGACAGCATGCAGGGCGCTCGCTGATAAAACGAAGTGCGCTCGGACACGAGCGGCTAGGGACAGCTAACTCCTTCCGGTCTCGGGTGGTGGTGGGAGAAGTATTCGACGCTGCTGCCCCTGCCGGCCACTTGGTGTACCAGCCAGTTGTGCCGTGGCCCGTGCCGCGGCCTGCGAGATGCACGAAGCCGCCAGGCCGCCAGTCGGCGGGGTCAGTGGGAAACGTGGGAAATTATAGGTTAGGTGTACGTGAAATATGTGCGGGAAATAGAGGCTGAGCAGTCCTGCCGTAGAGCGTATAGAGAGTAGTCTGAACGCTCTTGCTACAGTGGTTTTGTCATTTATTGTATGGTGTAAATCTACAACTATTTATTTTATTGTTTGGTAATGCTTTTTTATTTTGCAATAAACCCTTTCGGCAGCAATGAGCTCAAAAAAACGAAAGTGCATGTTTAATGAAAAATTAAGTACTGAATTTCCGTTTCTCAAGAAAGTTGATGATGAACGTGTAACTTGCACAAAATGTTTGTCGACATTTACCATCCACCATGGGGGCCGTAGTGATATCACTGACCACATGAAAACCAGAAGACACAAATCTGCTGAAGAAGCATCAGCATCTACTTCAAAAGTTAGTAGTTATTTTAAGAAGACTGTGCCCGAAGACGACGATTTAACACGTGCAGCTGCAGAAGGTGCGTTTACATATCACTCTGTGAAGCATGACTTTTCATTTAGATCAAATGACTGTTCTTCTAAATTAATTTCGCTCATTTTCGATTCCAAGTTTTCTTGTGCACGTACGAAAAGTGAAGCGATAGCTGTTAATGTGTTGGCTCCATTAGCAGAAGAACTTCGCAAACAGTTAAATGATGCCAGTTTTATATCAGTGTCATCAGATGCTTCAAATAGAAAATCAGTTAAGTTAATTCCAATAATGGTTCGATTTTTTCATCCAATTCATGGAATCAAAGTAAAGCTTTTGGAAGTTCATTCTGTCGAAGGTGAAACATCTGACATTATTGTGAATGCTATTGTAAATTCAGTTAAAAAGTTCAACATTGAAGATAAAATTATTTGTTTTTGCGGTGATAATACGAATACAAATTTTGGTGGAGCACAGCGTCGTGGTAAAAACAATGTTCTTACTAAATTAAGAAACCTATGGAGCAGAAATGTACTTGGAATTGGTTGTGGTGCACACATAATTCATAATTGCGTCCAAACAAGCTGCGATATTCTACCAATCGAAATAGAAGCTGTAGTTGTCAAAATTTACAAATATTTTTATATATACACAGTTAGAGTAACTGAACTACAAAATTTTTGTGACGAAGCTGATGTTGAATACAAAAAAATACTTCAGCATGGCAGTACGCGCTTTCTCTCTTTGCTGCCCGTCATCAATCGGATTTTAGAAATGTTTGAGCCTTTGAAGAACTACTTTGTAAATCAACCTAAGTGTCCTACAATGGTATTGAACTTTTTTGTAAACGAGTCCTCTAAATTTTGGTTGCATTTTGTTCAAAATCAGTTGGAAATCTTTAATCAAAGTATTCAACGAATGGAGCGCCAAAAAACTTCAGCTTTTGAAGCTTTTAGCGAATTGCAATTATTGAAAACAAAGCTTGCAAACAGGAAGACATTGAAATTTATCCCTACAAAAGCAAGGGAGGAACTGAACAAATTAAACGATGAGAGCTCAAACGGTGTACAAGATTTAATTTTGAAATTCTATAATTGCGCTTTGGAATATCTCGACTTGTGGGAAGAATCTTTTGATGGAGCTCCTATTTTTAATTGGATAAATTTATATTCTGTACCGGAATGGAATGAAATTGAGAAGGCCTACGATTTTGCAGCATCTAAATTTGGCGAAACATTCAAAAGAATCATAAATAGAGACAACTTATTTGACGAGTTTTGTCTTGTAAAAATATTTGTCGAAGAAAGGTACTCTGAATGGAGGCAAAAAGACAGTACCTGTGAAAATATTTGGGCTGAAATATTTACACATTTCAATATAAAAAAAATTAGAATTGAGAATATCCTCCATTTAGCAGAATTTGCTCTGAGCTTACCAGGTACCTCAGCACCTGTAGAGAGAGTATTTTCTCAATTAAAAATATTATGGTCTACAGAGAAGAGTCAATTGAAGGTGTCAACAATTTCAAATTTATTAACCATAAAATGCAACTTTGAAGAAGATTGCAGGCAATTTTATGAAAAAATTAAAAATAATAAGACCATATTGAAAAAATACATTCTTCAGAAAAATACCAGTGACACGGTATTAGAGACAGATACGGCTAAGAAACTGATTAAAGTACGTGAATATGTACCAAGAATAATTATTCTGCTTATGTTATTTTTAATGTTCAGATAATCAATATAAAATTTTTTAAAATTTTGCTTTAATGTACACGGATATATATTTTTATTTTTTAGAAAGAATTTTATTTTTGAAAATAGTTTTTGAATAGAACTATTTTATAGGTCCACCAATATAATAAAACCAATTTGTCGGTCAATAAATAAATATTTCAAAAAATTATATAATTTTAATTATTTTTAGCGCCCCCTTTCACTCTCAAAAGTGTCCCGGTTTGGACGATAAATTATATGGTCACCCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| BLACKJACK | Znf423 | 878 | 892 | - | 18.36 | GGCCCCCATGGTGGA |
| BLACKJACK | E2FC | 1899 | 1913 | + | 18.30 | AATGGAGCGCCAAAA |
| BLACKJACK | ELK1::HOXA1 | 403 | 416 | - | 17.43 | ACCGGAAGGAGTTA |
| BLACKJACK | SoxN | 1805 | 1815 | - | 17.36 | CAATACCATTG |
| BLACKJACK | ETV5::FOXI1 | 1966 | 1977 | + | 17.02 | GCAAACAGGAAG |
| BLACKJACK | TCX3 | 2502 | 2513 | + | 16.51 | AATTTCAAATTT |
| BLACKJACK | Zfx | 499 | 508 | + | 16.33 | GCCGCGGCCT |
| BLACKJACK | FOXO1::ELK3 | 1966 | 1978 | + | 16.25 | GCAAACAGGAAGA |
| BLACKJACK | FLI1::FOXI1 | 1967 | 1977 | + | 16.19 | CAAACAGGAAG |
| BLACKJACK | HAT5 | 1945 | 1953 | - | 16.17 | CAATAATTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
