BLACKJACK
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000074 |
|---|---|
| TE superfamily | Blackjack |
| TE class | DNA |
| Species | Eutheria |
| Length | 2969 |
| Kimura value | 25.22 |
| Tau index | 0.9830 |
| Description | hAT DNA transposon, BLACKJACK superfamily |
| Comment | BLACKJACK was active more than 100 million years ago. MER94 is a non- autonomous derivative of BLACKJACK. MER81, which is related to MER91, is a non-autonomous form of a BLACKJACK-like transposon. |
| Sequence |
TAGGGTGACCATACGTCCCGGTTTGCCCGGGACAGTCCCGGTTTACGCCTGTTGTCCCGGCGTCCCGTCCGGTTTAGCATTTGTCCCGGATTTTTCATTTTTTAACGAAGTATTATTATTAATAGTTGCATTAAAATAAGCCGGGATGGGTTTGGTAGACCTCCACTTTGTACTTCCAGCTTCTGCCATGGTCTCGTCTAGTAGTGTGTGAGACGCATGTGCAGTGAACAGAGTTCTCACTTTAACACGTGGTTAAATCTGAAAGACGACCAGCGATAACCCGTCTCTCTTTTCCCGACCCTTTCCAGACGCAACGTAACTAACACCTCCCTTTCAAGGACAGCATGCAGGGCGCTCGCTGATAAAACGAAGTGCGCTCGGACACGAGCGGCTAGGGACAGCTAACTCCTTCCGGTCTCGGGTGGTGGTGGGAGAAGTATTCGACGCTGCTGCCCCTGCCGGCCACTTGGTGTACCAGCCAGTTGTGCCGTGGCCCGTGCCGCGGCCTGCGAGATGCACGAAGCCGCCAGGCCGCCAGTCGGCGGGGTCAGTGGGAAACGTGGGAAATTATAGGTTAGGTGTACGTGAAATATGTGCGGGAAATAGAGGCTGAGCAGTCCTGCCGTAGAGCGTATAGAGAGTAGTCTGAACGCTCTTGCTACAGTGGTTTTGTCATTTATTGTATGGTGTAAATCTACAACTATTTATTTTATTGTTTGGTAATGCTTTTTTATTTTGCAATAAACCCTTTCGGCAGCAATGAGCTCAAAAAAACGAAAGTGCATGTTTAATGAAAAATTAAGTACTGAATTTCCGTTTCTCAAGAAAGTTGATGATGAACGTGTAACTTGCACAAAATGTTTGTCGACATTTACCATCCACCATGGGGGCCGTAGTGATATCACTGACCACATGAAAACCAGAAGACACAAATCTGCTGAAGAAGCATCAGCATCTACTTCAAAAGTTAGTAGTTATTTTAAGAAGACTGTGCCCGAAGACGACGATTTAACACGTGCAGCTGCAGAAGGTGCGTTTACATATCACTCTGTGAAGCATGACTTTTCATTTAGATCAAATGACTGTTCTTCTAAATTAATTTCGCTCATTTTCGATTCCAAGTTTTCTTGTGCACGTACGAAAAGTGAAGCGATAGCTGTTAATGTGTTGGCTCCATTAGCAGAAGAACTTCGCAAACAGTTAAATGATGCCAGTTTTATATCAGTGTCATCAGATGCTTCAAATAGAAAATCAGTTAAGTTAATTCCAATAATGGTTCGATTTTTTCATCCAATTCATGGAATCAAAGTAAAGCTTTTGGAAGTTCATTCTGTCGAAGGTGAAACATCTGACATTATTGTGAATGCTATTGTAAATTCAGTTAAAAAGTTCAACATTGAAGATAAAATTATTTGTTTTTGCGGTGATAATACGAATACAAATTTTGGTGGAGCACAGCGTCGTGGTAAAAACAATGTTCTTACTAAATTAAGAAACCTATGGAGCAGAAATGTACTTGGAATTGGTTGTGGTGCACACATAATTCATAATTGCGTCCAAACAAGCTGCGATATTCTACCAATCGAAATAGAAGCTGTAGTTGTCAAAATTTACAAATATTTTTATATATACACAGTTAGAGTAACTGAACTACAAAATTTTTGTGACGAAGCTGATGTTGAATACAAAAAAATACTTCAGCATGGCAGTACGCGCTTTCTCTCTTTGCTGCCCGTCATCAATCGGATTTTAGAAATGTTTGAGCCTTTGAAGAACTACTTTGTAAATCAACCTAAGTGTCCTACAATGGTATTGAACTTTTTTGTAAACGAGTCCTCTAAATTTTGGTTGCATTTTGTTCAAAATCAGTTGGAAATCTTTAATCAAAGTATTCAACGAATGGAGCGCCAAAAAACTTCAGCTTTTGAAGCTTTTAGCGAATTGCAATTATTGAAAACAAAGCTTGCAAACAGGAAGACATTGAAATTTATCCCTACAAAAGCAAGGGAGGAACTGAACAAATTAAACGATGAGAGCTCAAACGGTGTACAAGATTTAATTTTGAAATTCTATAATTGCGCTTTGGAATATCTCGACTTGTGGGAAGAATCTTTTGATGGAGCTCCTATTTTTAATTGGATAAATTTATATTCTGTACCGGAATGGAATGAAATTGAGAAGGCCTACGATTTTGCAGCATCTAAATTTGGCGAAACATTCAAAAGAATCATAAATAGAGACAACTTATTTGACGAGTTTTGTCTTGTAAAAATATTTGTCGAAGAAAGGTACTCTGAATGGAGGCAAAAAGACAGTACCTGTGAAAATATTTGGGCTGAAATATTTACACATTTCAATATAAAAAAAATTAGAATTGAGAATATCCTCCATTTAGCAGAATTTGCTCTGAGCTTACCAGGTACCTCAGCACCTGTAGAGAGAGTATTTTCTCAATTAAAAATATTATGGTCTACAGAGAAGAGTCAATTGAAGGTGTCAACAATTTCAAATTTATTAACCATAAAATGCAACTTTGAAGAAGATTGCAGGCAATTTTATGAAAAAATTAAAAATAATAAGACCATATTGAAAAAATACATTCTTCAGAAAAATACCAGTGACACGGTATTAGAGACAGATACGGCTAAGAAACTGATTAAAGTACGTGAATATGTACCAAGAATAATTATTCTGCTTATGTTATTTTTAATGTTCAGATAATCAATATAAAATTTTTTAAAATTTTGCTTTAATGTACACGGATATATATTTTTATTTTTTAGAAAGAATTTTATTTTTGAAAATAGTTTTTGAATAGAACTATTTTATAGGTCCACCAATATAATAAAACCAATTTGTCGGTCAATAAATAAATATTTCAAAAAATTATATAATTTTAATTATTTTTAGCGCCCCCTTTCACTCTCAAAAGTGTCCCGGTTTGGACGATAAATTATATGGTCACCCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| BLACKJACK | FOXJ2::ELF1 | 1968 | 1978 | + | 16.09 | AAACAGGAAGA |
| BLACKJACK | FOXO1::ELF1 | 1966 | 1978 | + | 16.08 | GCAAACAGGAAGA |
| BLACKJACK | AGL15 | 1481 | 1496 | - | 16.00 | TTTCTTAATTTAGTAA |
| BLACKJACK | ZHD3 | 1945 | 1953 | + | 15.98 | CAATTATTG |
| BLACKJACK | HOXB2::ELK1 | 403 | 416 | - | 15.92 | ACCGGAAGGAGTTA |
| BLACKJACK | TCX6 | 2504 | 2518 | + | 15.90 | TTTCAAATTTATTAA |
| BLACKJACK | HAT22 | 1945 | 1953 | - | 15.87 | CAATAATTG |
| BLACKJACK | ATHB-53 | 1945 | 1953 | - | 15.87 | CAATAATTG |
| BLACKJACK | FLI1::DRGX | 403 | 416 | - | 15.76 | ACCGGAAGGAGTTA |
| BLACKJACK | STB3 | 790 | 800 | - | 15.72 | AATTTTTCATT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
