BLACKJACK
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000074 |
|---|---|
| TE superfamily | Blackjack |
| TE class | DNA |
| Species | Eutheria |
| Length | 2969 |
| Kimura value | 25.22 |
| Tau index | 0.9830 |
| Description | hAT DNA transposon, BLACKJACK superfamily |
| Comment | BLACKJACK was active more than 100 million years ago. MER94 is a non- autonomous derivative of BLACKJACK. MER81, which is related to MER91, is a non-autonomous form of a BLACKJACK-like transposon. |
| Sequence |
TAGGGTGACCATACGTCCCGGTTTGCCCGGGACAGTCCCGGTTTACGCCTGTTGTCCCGGCGTCCCGTCCGGTTTAGCATTTGTCCCGGATTTTTCATTTTTTAACGAAGTATTATTATTAATAGTTGCATTAAAATAAGCCGGGATGGGTTTGGTAGACCTCCACTTTGTACTTCCAGCTTCTGCCATGGTCTCGTCTAGTAGTGTGTGAGACGCATGTGCAGTGAACAGAGTTCTCACTTTAACACGTGGTTAAATCTGAAAGACGACCAGCGATAACCCGTCTCTCTTTTCCCGACCCTTTCCAGACGCAACGTAACTAACACCTCCCTTTCAAGGACAGCATGCAGGGCGCTCGCTGATAAAACGAAGTGCGCTCGGACACGAGCGGCTAGGGACAGCTAACTCCTTCCGGTCTCGGGTGGTGGTGGGAGAAGTATTCGACGCTGCTGCCCCTGCCGGCCACTTGGTGTACCAGCCAGTTGTGCCGTGGCCCGTGCCGCGGCCTGCGAGATGCACGAAGCCGCCAGGCCGCCAGTCGGCGGGGTCAGTGGGAAACGTGGGAAATTATAGGTTAGGTGTACGTGAAATATGTGCGGGAAATAGAGGCTGAGCAGTCCTGCCGTAGAGCGTATAGAGAGTAGTCTGAACGCTCTTGCTACAGTGGTTTTGTCATTTATTGTATGGTGTAAATCTACAACTATTTATTTTATTGTTTGGTAATGCTTTTTTATTTTGCAATAAACCCTTTCGGCAGCAATGAGCTCAAAAAAACGAAAGTGCATGTTTAATGAAAAATTAAGTACTGAATTTCCGTTTCTCAAGAAAGTTGATGATGAACGTGTAACTTGCACAAAATGTTTGTCGACATTTACCATCCACCATGGGGGCCGTAGTGATATCACTGACCACATGAAAACCAGAAGACACAAATCTGCTGAAGAAGCATCAGCATCTACTTCAAAAGTTAGTAGTTATTTTAAGAAGACTGTGCCCGAAGACGACGATTTAACACGTGCAGCTGCAGAAGGTGCGTTTACATATCACTCTGTGAAGCATGACTTTTCATTTAGATCAAATGACTGTTCTTCTAAATTAATTTCGCTCATTTTCGATTCCAAGTTTTCTTGTGCACGTACGAAAAGTGAAGCGATAGCTGTTAATGTGTTGGCTCCATTAGCAGAAGAACTTCGCAAACAGTTAAATGATGCCAGTTTTATATCAGTGTCATCAGATGCTTCAAATAGAAAATCAGTTAAGTTAATTCCAATAATGGTTCGATTTTTTCATCCAATTCATGGAATCAAAGTAAAGCTTTTGGAAGTTCATTCTGTCGAAGGTGAAACATCTGACATTATTGTGAATGCTATTGTAAATTCAGTTAAAAAGTTCAACATTGAAGATAAAATTATTTGTTTTTGCGGTGATAATACGAATACAAATTTTGGTGGAGCACAGCGTCGTGGTAAAAACAATGTTCTTACTAAATTAAGAAACCTATGGAGCAGAAATGTACTTGGAATTGGTTGTGGTGCACACATAATTCATAATTGCGTCCAAACAAGCTGCGATATTCTACCAATCGAAATAGAAGCTGTAGTTGTCAAAATTTACAAATATTTTTATATATACACAGTTAGAGTAACTGAACTACAAAATTTTTGTGACGAAGCTGATGTTGAATACAAAAAAATACTTCAGCATGGCAGTACGCGCTTTCTCTCTTTGCTGCCCGTCATCAATCGGATTTTAGAAATGTTTGAGCCTTTGAAGAACTACTTTGTAAATCAACCTAAGTGTCCTACAATGGTATTGAACTTTTTTGTAAACGAGTCCTCTAAATTTTGGTTGCATTTTGTTCAAAATCAGTTGGAAATCTTTAATCAAAGTATTCAACGAATGGAGCGCCAAAAAACTTCAGCTTTTGAAGCTTTTAGCGAATTGCAATTATTGAAAACAAAGCTTGCAAACAGGAAGACATTGAAATTTATCCCTACAAAAGCAAGGGAGGAACTGAACAAATTAAACGATGAGAGCTCAAACGGTGTACAAGATTTAATTTTGAAATTCTATAATTGCGCTTTGGAATATCTCGACTTGTGGGAAGAATCTTTTGATGGAGCTCCTATTTTTAATTGGATAAATTTATATTCTGTACCGGAATGGAATGAAATTGAGAAGGCCTACGATTTTGCAGCATCTAAATTTGGCGAAACATTCAAAAGAATCATAAATAGAGACAACTTATTTGACGAGTTTTGTCTTGTAAAAATATTTGTCGAAGAAAGGTACTCTGAATGGAGGCAAAAAGACAGTACCTGTGAAAATATTTGGGCTGAAATATTTACACATTTCAATATAAAAAAAATTAGAATTGAGAATATCCTCCATTTAGCAGAATTTGCTCTGAGCTTACCAGGTACCTCAGCACCTGTAGAGAGAGTATTTTCTCAATTAAAAATATTATGGTCTACAGAGAAGAGTCAATTGAAGGTGTCAACAATTTCAAATTTATTAACCATAAAATGCAACTTTGAAGAAGATTGCAGGCAATTTTATGAAAAAATTAAAAATAATAAGACCATATTGAAAAAATACATTCTTCAGAAAAATACCAGTGACACGGTATTAGAGACAGATACGGCTAAGAAACTGATTAAAGTACGTGAATATGTACCAAGAATAATTATTCTGCTTATGTTATTTTTAATGTTCAGATAATCAATATAAAATTTTTTAAAATTTTGCTTTAATGTACACGGATATATATTTTTATTTTTTAGAAAGAATTTTATTTTTGAAAATAGTTTTTGAATAGAACTATTTTATAGGTCCACCAATATAATAAAACCAATTTGTCGGTCAATAAATAAATATTTCAAAAAATTATATAATTTTAATTATTTTTAGCGCCCCCTTTCACTCTCAAAAGTGTCCCGGTTTGGACGATAAATTATATGGTCACCCTA
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| BLACKJACK | BCL6B | 2773 | 2789 | - | -17.37 | TTCTTTCTAAAAAATAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
