Arthur2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001276 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Mammalia |
| Length | 3700 |
| Kimura value | 32.91 |
| Tau index | 1.0000 |
| Description | Repetitive element conserved in all mammals. |
| Comment | True termini are as yet undefined. ORF from pos 504-3239 encodes a transposases closest to that of hAT-82_HMa in Hydra in the Arthur (Dent/Riggs) sub group of Tip100/Hitchhiker elements. |
| Sequence |
CTTTCTTTTNCAGAGCATTAAAAAATCATAAAGCAGAAGNCTTGCCACTAAGTAGTGGGTGGTGTGNTGGGTGGGGAAGGGGCCATTCTGTCGAAACANAGTGAAGAAGAAAACCANNTAGCGGACAATGTGCTAAGAAGAAGACGGCATTGTGTTTAGAATAAAGACTGGGAAAAGCAGTTCAGTTGGGTGACACCCGATCGAGACAGTCCTACTAATGGAAAGTGCAAACACTGTTTGGGGACATTTACTGTGAAATGGGATGGGGTAAAGGCACTGAAGGTGCATGAAAAATCAGCCTTGCGTAGGCAGAAAACACAAACTTTAGCAGAAAATAAATTGCTGGAAAAGTTTTTATTGAAGAAGAGTAGTTCTGAGTGTGTGATAGCTTTAGTTAAAGCTTACGTAGTTAATCATTCCGTATTTGAGATTCGGGTTTTTTTTCCCCTTGATGTAATTAGCCATTAGGCTTACTAAAGTACATTTTTCATGTCAAGCAGACAATGGCTTCAAAGAAGAGAAAGGGCGGGGCTGCAAGGGAGCGAGAAAAGAAGGCCAGGTTGATGCNTGAAGAGGCAAAACAGTGTAGGAAAATATCAACATTTCTTGCACAATCANTCACTGAAAATGTGTCAGCAAGCACGAGGCCATCTTTAACTGGCAATAATACAACTGAAATAGATCATTTAAGTAAGGGAGGCAGTATTACTGAGNCCAACATGCCTATCGACACTTGTTTGACTGTCTCAGAAGAACAAAATACCGAGAGGCAAGAGCTTAAAGTGAATGAAAATNTATCCAATTCACAATCAAATGAAAATGCTATGGGCCCAGAGCCAGAGAATATTCTTGNATTGGACTTTTTTCAGCGCCCTAAATTTAACCAGCTGGAATTCTTTTTTAAGTACCATCCTATTCAACCTTTTGAAATGAAGGATTTGCCTTTTAATGGGAAATCTGCATTTCATCGTAAAGATGGAACACAACGTCCTTGGCTTAGTTATTCTCCAGAGAAGCAGGCTCTTTTTTGTACTGTATGCTTAGCATATAGTAAAGACACAGATTCCAGCAAATTTATTTCAGGCATGANAGACTGGAGGCATACATACGTACGGATAGAGGAGCATGAAAAATGTAACCTCCACTTCCAGNGCGCTGAATGCCATATAATGAAAACTCTCGGAGGTGACATCACTAAACTCCTGTTTCACAACCAGGAGTCCGCGAGGATAGAACAAGTCAAGAGAAAAAGAGCAGTTTTAGAACGAGTGATTGATGTAATTAAAGTTATTGGTAAAGAAGGGCTCAGTTATCGAGGGGCAAATGAGTCAGCAGCAAGTTTAAGCAATGAAACAGCGCGCCATGGGGTGTTTCTCGAATTCTTGCTTATTTTGGGAAAGTATGATGCCCTACTCAAAGAGCACCTTGAATCTGTAATAGCTAGAGCAAATCGAAAAAGTAGTGGAGGAAGAAGTGCTCATATAACTCTCATTTCTAAAACAACAGTGAACTATGTTATTGACAGTATCGGCAGCTTAATTAAGAAGTCTGTTAGTGATGATGTTAAGAAAGCTGGCACATTTTCAATTCAGATTGACACTACTCAAGACATAGGCATAACTGATGTTTGTTCAGTAATACTAAGATATGTCACAGAATCTGTGAGAGAACGTCTGATATCTATAGTAAGCTTAAAGTCAAGTACCGGGGAAAATATGTTCCAGACTGTTGCAGATGTTCTCAGATCAAATNATATTTCTNTGAAAAATTGTGTAGGATGTTCAACTGATGGAGCATCNAACATGAAAGGACAGTTCAATGGGTTTGCATCNTGGTTAAAAAAAGAATCATCTAGCCAAGTTTATGTGTGGTGTTATTCACATGTTTTGAATCTGGTAATAGTAGATGTAACGGGAGTGTCAGAAGAGGCTACTTCACTATTTGGACTTTTAAATTCCTGTGCTGCATTTTTAAGAGAGTCACATAAAAGAATGGATATTTGGCGTGAACGCTGCAGGGACCTGTCGCACTCTCTCACTGGAGAAACAAGGTGGTGGTCTAAAGAGGTAGCTTTGAGAAAAGCGNTTGGGGTTTTTAAAGAGCCATCTAATTCATTATTTGTGACAATAATNGAAACTTCGAGTAGAATATGTTCCCACACAGAGGATTTTGGTTTAGATACCAGATACAAGGCTAGGACACTAAAACAGTCACTGTGCAGGTTTGAAACCATACTTACTGCTCAGTTGTTTCTGAAAANTTTTAGATCAACTACACCACTTTCAAAGTATCTGCAGACAAGTGGCATGGATATATTACAGGCCCAGAGAATGGTTTCAGAAACAATCAAAACATTACATGCAGAGTCAAGAAATTTTAGAGATGTTCTTGAGGGAGCACAAGCCTTCGTTTCATGGGCAAATNAAGAACTCAGTGCCAAGGAAATTGATGTTATGCTAGAAAGTTCCCTNCCTGAAGTACGTACGCGACTTAAGGGGAAAATGGATGGAGAAAATATAAGTGACCAACCTATGACATCAAATGAAAAATTCAGAATAAATGTCCATAATGTTGTAATGGACACAGTTGTTCAACACCTCAAAGATCGATTTAAAACGCATTCNCATCTTGCTGCAGATATCGCCTATCTAGATCCGAGAAACTTTAGTCACATAAACTCTAATATGCCTGATTTAGCTTTAAGAAACCTTTGTGACCTAATAAACAAACAAGGTCTGGTGGGAACCAAAGTGGAAATTCAGGATCTCAAAGACGAGCTGAGAGATTTTGCTCAGAAATGGGACAGATTGAAACAATCTCTACCAAAGGAGTATGAGACAGAAAAGGAGATTGANTCAGAAGAGGAAGAAGGCCAGTGTCATACTGAAGAGCCACAAATGCCACAAATTGAAAACAAAATGCGCAATACTTGTTATAATTGTTCAGTGTGCTGCTATAACGTTTTAAAACATTACAAACTTTATAGCAGTGCTTATGACAATATTTACCTGGCTTATAAACTGATTTTGACATTGTCTTGTACTCAGGTTGCATGTGAAAGAAGTTTTTCTACCTTAAAGAATATCAGAACCAGGCTCGGGAATAGACTCACTGAAGAACACTTAGAGAGTTTCATGCTTATGAGCATAAATTGTGATATTTTACTACGCCTAAACTATGATGAAATCATTGAAGGCGTCATAGCAAGAAGCAAAACCCTAGGGAGGCTATTAACAATTTAGCATTTCCAGTTCATGTGGGAATGTTAATTCCACTTACCGAAGAGAAGTACAGAAATGGTGTTCATTATGATTAAGACCTTGTAACTGTAGAAATGTAGAAGTGTGAAATTTATAATATTATAGACATGTTTAGTATAAAATGCAAATATCGCAGCAGAGTGGGTTGGGCATCCGGGTCTCAGCTGGGTTTCCCTTGAACCTATTACCTTACAAAGTTAAACACAGGTATAGGTCTTTCACAAAGGCAGTATGTTATTCTAAAGTAGCATCTTAGATCATCTTACTAGGGTTACGATGGCCACTTCAACTGGCTAACAGCTGTGCTAGCCTCACAAATAACCAAAAAGTATATTNATTTTTGGCAGCGGACTAGGGAAGTTGTGTGTGTGTTGGTTTAACAGTAAAATAGCATTTTCAAATTTTAATAAATTATTGGCATGTTATCTGTCATATACATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur2 | MEIS1 | 1270 | 1278 | - | 15.29 | CATCAATCA |
| Arthur2 | EFM | 841 | 849 | + | 15.24 | AGAATATTC |
| Arthur2 | EFM | 842 | 850 | - | 15.24 | AGAATATTC |
| Arthur2 | PROX1 | 3192 | 3203 | - | 15.16 | TATGACGCCTTC |
| Arthur2 | SP4 | 523 | 531 | + | 15.12 | AGGGCGGGG |
| Arthur2 | PLT1 | 1303 | 1318 | + | 15.07 | GGCTCAGTTATCGAGG |
| Arthur2 | Spi1 | 2859 | 2871 | + | 15.02 | GAAGAGGAAGAAG |
| Arthur2 | ATF4 | 3178 | 3187 | + | 14.99 | ATGATGAAAT |
| Arthur2 | PHL4 | 841 | 850 | + | 14.97 | AGAATATTCT |
| Arthur2 | PHL4 | 841 | 850 | - | 14.97 | AGAATATTCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
