Arthur2
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001276 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Mammalia |
| Length | 3700 |
| Kimura value | 32.91 |
| Tau index | 1.0000 |
| Description | Repetitive element conserved in all mammals. |
| Comment | True termini are as yet undefined. ORF from pos 504-3239 encodes a transposases closest to that of hAT-82_HMa in Hydra in the Arthur (Dent/Riggs) sub group of Tip100/Hitchhiker elements. |
| Sequence |
CTTTCTTTTNCAGAGCATTAAAAAATCATAAAGCAGAAGNCTTGCCACTAAGTAGTGGGTGGTGTGNTGGGTGGGGAAGGGGCCATTCTGTCGAAACANAGTGAAGAAGAAAACCANNTAGCGGACAATGTGCTAAGAAGAAGACGGCATTGTGTTTAGAATAAAGACTGGGAAAAGCAGTTCAGTTGGGTGACACCCGATCGAGACAGTCCTACTAATGGAAAGTGCAAACACTGTTTGGGGACATTTACTGTGAAATGGGATGGGGTAAAGGCACTGAAGGTGCATGAAAAATCAGCCTTGCGTAGGCAGAAAACACAAACTTTAGCAGAAAATAAATTGCTGGAAAAGTTTTTATTGAAGAAGAGTAGTTCTGAGTGTGTGATAGCTTTAGTTAAAGCTTACGTAGTTAATCATTCCGTATTTGAGATTCGGGTTTTTTTTCCCCTTGATGTAATTAGCCATTAGGCTTACTAAAGTACATTTTTCATGTCAAGCAGACAATGGCTTCAAAGAAGAGAAAGGGCGGGGCTGCAAGGGAGCGAGAAAAGAAGGCCAGGTTGATGCNTGAAGAGGCAAAACAGTGTAGGAAAATATCAACATTTCTTGCACAATCANTCACTGAAAATGTGTCAGCAAGCACGAGGCCATCTTTAACTGGCAATAATACAACTGAAATAGATCATTTAAGTAAGGGAGGCAGTATTACTGAGNCCAACATGCCTATCGACACTTGTTTGACTGTCTCAGAAGAACAAAATACCGAGAGGCAAGAGCTTAAAGTGAATGAAAATNTATCCAATTCACAATCAAATGAAAATGCTATGGGCCCAGAGCCAGAGAATATTCTTGNATTGGACTTTTTTCAGCGCCCTAAATTTAACCAGCTGGAATTCTTTTTTAAGTACCATCCTATTCAACCTTTTGAAATGAAGGATTTGCCTTTTAATGGGAAATCTGCATTTCATCGTAAAGATGGAACACAACGTCCTTGGCTTAGTTATTCTCCAGAGAAGCAGGCTCTTTTTTGTACTGTATGCTTAGCATATAGTAAAGACACAGATTCCAGCAAATTTATTTCAGGCATGANAGACTGGAGGCATACATACGTACGGATAGAGGAGCATGAAAAATGTAACCTCCACTTCCAGNGCGCTGAATGCCATATAATGAAAACTCTCGGAGGTGACATCACTAAACTCCTGTTTCACAACCAGGAGTCCGCGAGGATAGAACAAGTCAAGAGAAAAAGAGCAGTTTTAGAACGAGTGATTGATGTAATTAAAGTTATTGGTAAAGAAGGGCTCAGTTATCGAGGGGCAAATGAGTCAGCAGCAAGTTTAAGCAATGAAACAGCGCGCCATGGGGTGTTTCTCGAATTCTTGCTTATTTTGGGAAAGTATGATGCCCTACTCAAAGAGCACCTTGAATCTGTAATAGCTAGAGCAAATCGAAAAAGTAGTGGAGGAAGAAGTGCTCATATAACTCTCATTTCTAAAACAACAGTGAACTATGTTATTGACAGTATCGGCAGCTTAATTAAGAAGTCTGTTAGTGATGATGTTAAGAAAGCTGGCACATTTTCAATTCAGATTGACACTACTCAAGACATAGGCATAACTGATGTTTGTTCAGTAATACTAAGATATGTCACAGAATCTGTGAGAGAACGTCTGATATCTATAGTAAGCTTAAAGTCAAGTACCGGGGAAAATATGTTCCAGACTGTTGCAGATGTTCTCAGATCAAATNATATTTCTNTGAAAAATTGTGTAGGATGTTCAACTGATGGAGCATCNAACATGAAAGGACAGTTCAATGGGTTTGCATCNTGGTTAAAAAAAGAATCATCTAGCCAAGTTTATGTGTGGTGTTATTCACATGTTTTGAATCTGGTAATAGTAGATGTAACGGGAGTGTCAGAAGAGGCTACTTCACTATTTGGACTTTTAAATTCCTGTGCTGCATTTTTAAGAGAGTCACATAAAAGAATGGATATTTGGCGTGAACGCTGCAGGGACCTGTCGCACTCTCTCACTGGAGAAACAAGGTGGTGGTCTAAAGAGGTAGCTTTGAGAAAAGCGNTTGGGGTTTTTAAAGAGCCATCTAATTCATTATTTGTGACAATAATNGAAACTTCGAGTAGAATATGTTCCCACACAGAGGATTTTGGTTTAGATACCAGATACAAGGCTAGGACACTAAAACAGTCACTGTGCAGGTTTGAAACCATACTTACTGCTCAGTTGTTTCTGAAAANTTTTAGATCAACTACACCACTTTCAAAGTATCTGCAGACAAGTGGCATGGATATATTACAGGCCCAGAGAATGGTTTCAGAAACAATCAAAACATTACATGCAGAGTCAAGAAATTTTAGAGATGTTCTTGAGGGAGCACAAGCCTTCGTTTCATGGGCAAATNAAGAACTCAGTGCCAAGGAAATTGATGTTATGCTAGAAAGTTCCCTNCCTGAAGTACGTACGCGACTTAAGGGGAAAATGGATGGAGAAAATATAAGTGACCAACCTATGACATCAAATGAAAAATTCAGAATAAATGTCCATAATGTTGTAATGGACACAGTTGTTCAACACCTCAAAGATCGATTTAAAACGCATTCNCATCTTGCTGCAGATATCGCCTATCTAGATCCGAGAAACTTTAGTCACATAAACTCTAATATGCCTGATTTAGCTTTAAGAAACCTTTGTGACCTAATAAACAAACAAGGTCTGGTGGGAACCAAAGTGGAAATTCAGGATCTCAAAGACGAGCTGAGAGATTTTGCTCAGAAATGGGACAGATTGAAACAATCTCTACCAAAGGAGTATGAGACAGAAAAGGAGATTGANTCAGAAGAGGAAGAAGGCCAGTGTCATACTGAAGAGCCACAAATGCCACAAATTGAAAACAAAATGCGCAATACTTGTTATAATTGTTCAGTGTGCTGCTATAACGTTTTAAAACATTACAAACTTTATAGCAGTGCTTATGACAATATTTACCTGGCTTATAAACTGATTTTGACATTGTCTTGTACTCAGGTTGCATGTGAAAGAAGTTTTTCTACCTTAAAGAATATCAGAACCAGGCTCGGGAATAGACTCACTGAAGAACACTTAGAGAGTTTCATGCTTATGAGCATAAATTGTGATATTTTACTACGCCTAAACTATGATGAAATCATTGAAGGCGTCATAGCAAGAAGCAAAACCCTAGGGAGGCTATTAACAATTTAGCATTTCCAGTTCATGTGGGAATGTTAATTCCACTTACCGAAGAGAAGTACAGAAATGGTGTTCATTATGATTAAGACCTTGTAACTGTAGAAATGTAGAAGTGTGAAATTTATAATATTATAGACATGTTTAGTATAAAATGCAAATATCGCAGCAGAGTGGGTTGGGCATCCGGGTCTCAGCTGGGTTTCCCTTGAACCTATTACCTTACAAAGTTAAACACAGGTATAGGTCTTTCACAAAGGCAGTATGTTATTCTAAAGTAGCATCTTAGATCATCTTACTAGGGTTACGATGGCCACTTCAACTGGCTAACAGCTGTGCTAGCCTCACAAATAACCAAAAAGTATATTNATTTTTGGCAGCGGACTAGGGAAGTTGTGTGTGTGTTGGTTTAACAGTAAAATAGCATTTTCAAATTTTAATAAATTATTGGCATGTTATCTGTCATATACATG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur2 | cg | 3622 | 3632 | - | 19.33 | ACACACACACA |
| Arthur2 | TSO1 | 3656 | 3670 | - | 17.92 | TTATTAAAATTTGAA |
| Arthur2 | MAF::NFE2 | 1324 | 1334 | + | 17.74 | ATGAGTCAGCA |
| Arthur2 | SOL1 | 3655 | 3669 | - | 17.72 | TATTAAAATTTGAAA |
| Arthur2 | MAFG::NFE2L1 | 1324 | 1334 | + | 17.52 | ATGAGTCAGCA |
| Arthur2 | Nfe2l2 | 1324 | 1334 | + | 17.38 | ATGAGTCAGCA |
| Arthur2 | TCX2 | 3655 | 3669 | - | 17.37 | TATTAAAATTTGAAA |
| Arthur2 | Bach1::Mafk | 1323 | 1334 | + | 16.96 | AATGAGTCAGCA |
| Arthur2 | PHL11 | 841 | 850 | + | 16.78 | AGAATATTCT |
| Arthur2 | PHL11 | 841 | 850 | - | 16.78 | AGAATATTCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
