Arthur1C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000072 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 363 |
| Kimura value | 24.85 |
| Tau index | 0.9926 |
| Description | hAT-Tip100 DNA transposon, Arthur1C subfamily |
| Comment | Arthur1C has 8 bp TSDs. Positions 1-67 and 217-363 correspond to positions 1-67 and 3801-3947 of the autonomous Arthur1. Region 68-216 is unique to Arthur1C. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTGTGAGTGCTGGGAGTTGCTGGGAGTTGTAGAGTGTTCTAGGTGGGGAGGGGAAGCCAGGTTGCAATCAGGAAGCATTTCTATGTAAGCATTTCTGGTAAATTGCCTAAAGAGATCTCAGAAGAAAGGGACCTGAATCTCCAAGGCTCCAGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCCAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1C | PLAGL2 | 60 | 67 | + | 13.61 | GGGCCCCT |
| Arthur1C | ETV5::FIGLA | 346 | 359 | - | 13.48 | GGCGGATCCAGGTT |
| Arthur1C | TCP19 | 336 | 343 | + | 13.44 | GGCCCCAC |
| Arthur1C | KLF12 | 110 | 118 | + | 13.40 | GGGGAGGGG |
| Arthur1C | KLF10 | 110 | 118 | + | 13.37 | GGGGAGGGG |
| Arthur1C | PLAGL2 | 311 | 318 | + | 13.18 | GGCCCCCC |
| Arthur1C | Klf6-7-like | 70 | 89 | - | 13.17 | CCCAGCAACTCCCAGCACTC |
| Arthur1C | KLF1 | 111 | 118 | + | 13.17 | GGGAGGGG |
| Arthur1C | VIT_15s0048g01150 | 336 | 343 | + | 13.13 | GGCCCCAC |
| Arthur1C | sptf-3 | 355 | 361 | + | 13.11 | CCGCCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
