Arthur1C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000072 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 363 |
| Kimura value | 24.85 |
| Tau index | 0.9926 |
| Description | hAT-Tip100 DNA transposon, Arthur1C subfamily |
| Comment | Arthur1C has 8 bp TSDs. Positions 1-67 and 217-363 correspond to positions 1-67 and 3801-3947 of the autonomous Arthur1. Region 68-216 is unique to Arthur1C. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTGTGAGTGCTGGGAGTTGCTGGGAGTTGTAGAGTGTTCTAGGTGGGGAGGGGAAGCCAGGTTGCAATCAGGAAGCATTTCTATGTAAGCATTTCTGGTAAATTGCCTAAAGAGATCTCAGAAGAAAGGGACCTGAATCTCCAAGGCTCCAGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCCAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1C | Thap11 | 85 | 98 | - | 18.29 | TCTACAACTCCCAG |
| Arthur1C | MYB27 | 266 | 277 | - | 17.77 | CAAAATTAGGTA |
| Arthur1C | TB1 | 310 | 318 | + | 17.38 | GGGCCCCCC |
| Arthur1C | Prdm15 | 343 | 353 | + | 16.85 | CAAAACCTGGA |
| Arthur1C | MAZ | 111 | 118 | - | 16.08 | CCCCTCCC |
| Arthur1C | SP1 | 110 | 118 | + | 16.06 | GGGGAGGGG |
| Arthur1C | SP4 | 110 | 118 | + | 15.85 | GGGGAGGGG |
| Arthur1C | IRF7 | 253 | 265 | - | 15.68 | CGAAAGTGAATAT |
| Arthur1C | PLAGL2 | 310 | 317 | + | 15.67 | GGGCCCCC |
| Arthur1C | ZNF148 | 109 | 118 | - | 15.61 | CCCCTCCCCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
