Arthur1C
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000072 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 363 |
| Kimura value | 24.85 |
| Tau index | 0.9926 |
| Description | hAT-Tip100 DNA transposon, Arthur1C subfamily |
| Comment | Arthur1C has 8 bp TSDs. Positions 1-67 and 217-363 correspond to positions 1-67 and 3801-3947 of the autonomous Arthur1. Region 68-216 is unique to Arthur1C. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTGTGAGTGCTGGGAGTTGCTGGGAGTTGTAGAGTGTTCTAGGTGGGGAGGGGAAGCCAGGTTGCAATCAGGAAGCATTTCTATGTAAGCATTTCTGGTAAATTGCCTAAAGAGATCTCAGAAGAAAGGGACCTGAATCTCCAAGGCTCCAGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCCAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1C | MYB57 | 266 | 275 | + | 15.44 | TACCTAATTT |
| Arthur1C | ARALYDRAFT_495258 | 336 | 343 | + | 15.43 | GGCCCCAC |
| Arthur1C | ARALYDRAFT_484486 | 336 | 343 | + | 15.43 | GGCCCCAC |
| Arthur1C | PK19717.1 | 310 | 318 | + | 15.24 | GGGCCCCCC |
| Arthur1C | MYB108 | 266 | 275 | + | 14.75 | TACCTAATTT |
| Arthur1C | ARALYDRAFT_493022 | 336 | 343 | + | 14.64 | GGCCCCAC |
| Arthur1C | btd | 354 | 362 | - | 14.64 | AGGGGCGGA |
| Arthur1C | sens | 224 | 233 | - | 14.46 | AAATCACAAC |
| Arthur1C | SP2 | 110 | 118 | + | 14.29 | GGGGAGGGG |
| Arthur1C | KLF5 | 110 | 119 | - | 14.27 | TCCCCTCCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
