Arthur1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000071 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 1225 |
| Kimura value | 25.66 |
| Tau index | 0.9813 |
| Description | hAT-Tip100 DNA transposon, Arthur1B subfamily |
| Comment | Arthur1B has 8 bp TSDs and 11 bp TIRs. Positions 1-831 and 829-1226 correspond to positions 1-831 and 3551-3947 of the autonomous Arthur1 element. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTTCCAAGGCCCTGGGAGGGGCCCTAGCAATGTGTTCACATGGTCATATGTTTTTGTAAAATTTGCAAAAGTAAGATATTTTAACCGCAATCGGTTAAGACCGCTGTCTCTTTCCACTCCGACTTCCCCTCCGTCACACTTCCCCTCGTGTCGGGTGGCGTTGGAGTGGCCGCGGGCATTTTTGGGATCCGGCTAAGGGGAAGTTGAGTTGGGGATACATTTAGTTTGGGTTTAGTGGGATATATTTATGTGGTTCGCAGTCACTTCCGTGTATAGTTAAGTTATTGCTAGCCGTCCCGGTGTAGGAATGGCTTCCAGGAATACTCCTACCGCCCACTGTGCCGACTCACCCGGCGTCGTGACACGAAGGTGCAGGGCCAGAGGTCGTATCGCGATATGAACGTGTCCTACGGCGCCCGGCACCGGAAGTATGTGGGTAGTGGAGGAGAAACAAGGTTTGAAATGTACGGAGCCAGAAGCTAGTCTGTGGAAAATTCTTCCAATCATCAGACGTGTAAAATTGTAAGCGGAGGATTCGGTTCTCATCGACGCCTAGTCAAAACGGAAGTTCTCTCCTGTCAGGAATATACTCGATAATGCAGCGTATACAATTATAAACGCACCATACATTTTTTTTCTTTTTTGATGGGAATCGCGCGAAATAGAATTTATCAGAATTCCTGTGTTTGTAGGGCACAAACCTGTAGCAGTACTACAAACAGCGAGTACGTCTGTGTGTGAAGTCGCATGTTTTATGCATCCCAACTATCAATAATAAAAAACAAATTTCGATCAACCATGCTAGAGGAAAGACTGAATTATCTTTCTATTCTCTCTATAGAAAATAATATTACAAAATCGTTGTCATATGAAGAGGCGATCAAAGAGTATGCAGCCAAAAAATGTAGGGAAAAAGTATTATAGAGGTGTGTCAGGCAGTTAATTAATAAAAATATTATGTTATTTTTCTGGATTTTGTGATGTTTGTGGTATTTGTCAGCTTTTTAAAATTTGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCAAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1B | IRF4 | 287 | 300 | - | 1.94 | CTAAACCCAAACTA |
| Arthur1B | GLI3 | 1172 | 1186 | + | 0.35 | GGGCCCCCAAAATTG |
| Arthur1B | GLIS1 | 392 | 406 | + | 0.15 | CTACCGCCCACTGTG |
| Arthur1B | ZNF410 | 1016 | 1031 | - | -3.20 | AAATAACATAATATTT |
| Arthur1B | IRF9 | 1115 | 1129 | - | -4.13 | TACGAAAGTGAATAT |
| Arthur1B | ZAP1 | 14 | 28 | + | -4.55 | ACCGTGAAGCTAATG |
| Arthur1B | E2F7 | 706 | 719 | - | -4.56 | GATTCCCATCAAAA |
| Arthur1B | BPC5 | 180 | 209 | - | -46.12 | GGGAAGTGTGACGGAGGGGAAGTCGGAGTG |
| Arthur1B | BPC5 | 176 | 205 | - | -47.43 | AGTGTGACGGAGGGGAAGTCGGAGTGGAAA |
| Arthur1B | DAL81 | 230 | 248 | + | -52.00 | AGTGGCCGCGGGCATTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
