Arthur1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000071 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 1225 |
| Kimura value | 25.66 |
| Tau index | 0.9813 |
| Description | hAT-Tip100 DNA transposon, Arthur1B subfamily |
| Comment | Arthur1B has 8 bp TSDs and 11 bp TIRs. Positions 1-831 and 829-1226 correspond to positions 1-831 and 3551-3947 of the autonomous Arthur1 element. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTTCCAAGGCCCTGGGAGGGGCCCTAGCAATGTGTTCACATGGTCATATGTTTTTGTAAAATTTGCAAAAGTAAGATATTTTAACCGCAATCGGTTAAGACCGCTGTCTCTTTCCACTCCGACTTCCCCTCCGTCACACTTCCCCTCGTGTCGGGTGGCGTTGGAGTGGCCGCGGGCATTTTTGGGATCCGGCTAAGGGGAAGTTGAGTTGGGGATACATTTAGTTTGGGTTTAGTGGGATATATTTATGTGGTTCGCAGTCACTTCCGTGTATAGTTAAGTTATTGCTAGCCGTCCCGGTGTAGGAATGGCTTCCAGGAATACTCCTACCGCCCACTGTGCCGACTCACCCGGCGTCGTGACACGAAGGTGCAGGGCCAGAGGTCGTATCGCGATATGAACGTGTCCTACGGCGCCCGGCACCGGAAGTATGTGGGTAGTGGAGGAGAAACAAGGTTTGAAATGTACGGAGCCAGAAGCTAGTCTGTGGAAAATTCTTCCAATCATCAGACGTGTAAAATTGTAAGCGGAGGATTCGGTTCTCATCGACGCCTAGTCAAAACGGAAGTTCTCTCCTGTCAGGAATATACTCGATAATGCAGCGTATACAATTATAAACGCACCATACATTTTTTTTCTTTTTTGATGGGAATCGCGCGAAATAGAATTTATCAGAATTCCTGTGTTTGTAGGGCACAAACCTGTAGCAGTACTACAAACAGCGAGTACGTCTGTGTGTGAAGTCGCATGTTTTATGCATCCCAACTATCAATAATAAAAAACAAATTTCGATCAACCATGCTAGAGGAAAGACTGAATTATCTTTCTATTCTCTCTATAGAAAATAATATTACAAAATCGTTGTCATATGAAGAGGCGATCAAAGAGTATGCAGCCAAAAAATGTAGGGAAAAAGTATTATAGAGGTGTGTCAGGCAGTTAATTAATAAAAATATTATGTTATTTTTCTGGATTTTGTGATGTTTGTGGTATTTGTCAGCTTTTTAAAATTTGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCAAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1B | ZBED1 | 453 | 464 | + | 18.40 | TATCGCGATATG |
| Arthur1B | MYB27 | 1128 | 1139 | - | 17.77 | CAAAATTAGGTA |
| Arthur1B | FEV | 487 | 495 | + | 17.06 | ACCGGAAGT |
| Arthur1B | ELK1 | 487 | 495 | + | 17.02 | ACCGGAAGT |
| Arthur1B | ETV5 | 487 | 495 | + | 17.00 | ACCGGAAGT |
| Arthur1B | Prdm15 | 1205 | 1215 | + | 16.85 | CAAAACCTGGA |
| Arthur1B | ELK3 | 487 | 495 | + | 16.80 | ACCGGAAGT |
| Arthur1B | Ets96B | 487 | 495 | + | 16.57 | ACCGGAAGT |
| Arthur1B | SOL1 | 1068 | 1082 | - | 16.55 | TTACAAATTTTAAAA |
| Arthur1B | RVE4 | 139 | 147 | + | 16.53 | AGATATTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
