Arthur1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000071 |
|---|---|
| TE superfamily | Tip100 |
| TE order | DNA |
| Species | Eutheria |
| Length | 1225 |
| Kimura value | 25.66 |
| Tau index | 0.9813 |
| Description | hAT-Tip100 DNA transposon, Arthur1B subfamily |
| Comment | Arthur1B has 8 bp TSDs and 11 bp TIRs. Positions 1-831 and 829-1226 correspond to positions 1-831 and 3551-3947 of the autonomous Arthur1 element. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTTCCAAGGCCCTGGGAGGGGCCCTAGCAATGTGTTCACATGGTCATATGTTTTTGTAAAATTTGCAAAAGTAAGATATTTTAACCGCAATCGGTTAAGACCGCTGTCTCTTTCCACTCCGACTTCCCCTCCGTCACACTTCCCCTCGTGTCGGGTGGCGTTGGAGTGGCCGCGGGCATTTTTGGGATCCGGCTAAGGGGAAGTTGAGTTGGGGATACATTTAGTTTGGGTTTAGTGGGATATATTTATGTGGTTCGCAGTCACTTCCGTGTATAGTTAAGTTATTGCTAGCCGTCCCGGTGTAGGAATGGCTTCCAGGAATACTCCTACCGCCCACTGTGCCGACTCACCCGGCGTCGTGACACGAAGGTGCAGGGCCAGAGGTCGTATCGCGATATGAACGTGTCCTACGGCGCCCGGCACCGGAAGTATGTGGGTAGTGGAGGAGAAACAAGGTTTGAAATGTACGGAGCCAGAAGCTAGTCTGTGGAAAATTCTTCCAATCATCAGACGTGTAAAATTGTAAGCGGAGGATTCGGTTCTCATCGACGCCTAGTCAAAACGGAAGTTCTCTCCTGTCAGGAATATACTCGATAATGCAGCGTATACAATTATAAACGCACCATACATTTTTTTTCTTTTTTGATGGGAATCGCGCGAAATAGAATTTATCAGAATTCCTGTGTTTGTAGGGCACAAACCTGTAGCAGTACTACAAACAGCGAGTACGTCTGTGTGTGAAGTCGCATGTTTTATGCATCCCAACTATCAATAATAAAAAACAAATTTCGATCAACCATGCTAGAGGAAAGACTGAATTATCTTTCTATTCTCTCTATAGAAAATAATATTACAAAATCGTTGTCATATGAAGAGGCGATCAAAGAGTATGCAGCCAAAAAATGTAGGGAAAAAGTATTATAGAGGTGTGTCAGGCAGTTAATTAATAAAAATATTATGTTATTTTTCTGGATTTTGTGATGTTTGTGGTATTTGTCAGCTTTTTAAAATTTGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCAAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1B | PLAGL2 | 1172 | 1179 | + | 15.67 | GGGCCCCC |
| Arthur1B | STAT1 | 378 | 386 | + | 15.62 | TTCCAGGAA |
| Arthur1B | RVE1 | 139 | 147 | - | 15.59 | AAAATATCT |
| Arthur1B | ETV4 | 487 | 495 | + | 15.53 | ACCGGAAGT |
| Arthur1B | ETS1 | 487 | 495 | + | 15.47 | ACCGGAAGT |
| Arthur1B | RVE7L | 139 | 147 | - | 15.47 | AAAATATCT |
| Arthur1B | MYB57 | 1128 | 1137 | + | 15.44 | TACCTAATTT |
| Arthur1B | ARALYDRAFT_495258 | 1198 | 1205 | + | 15.43 | GGCCCCAC |
| Arthur1B | ARALYDRAFT_484486 | 1198 | 1205 | + | 15.43 | GGCCCCAC |
| Arthur1B | SPL15 | 529 | 536 | + | 15.37 | TGTACGGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
