Arthur1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000071 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 1225 |
| Kimura value | 25.66 |
| Tau index | 0.9813 |
| Description | hAT-Tip100 DNA transposon, Arthur1B subfamily |
| Comment | Arthur1B has 8 bp TSDs and 11 bp TIRs. Positions 1-831 and 829-1226 correspond to positions 1-831 and 3551-3947 of the autonomous Arthur1 element. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTTCCAAGGCCCTGGGAGGGGCCCTAGCAATGTGTTCACATGGTCATATGTTTTTGTAAAATTTGCAAAAGTAAGATATTTTAACCGCAATCGGTTAAGACCGCTGTCTCTTTCCACTCCGACTTCCCCTCCGTCACACTTCCCCTCGTGTCGGGTGGCGTTGGAGTGGCCGCGGGCATTTTTGGGATCCGGCTAAGGGGAAGTTGAGTTGGGGATACATTTAGTTTGGGTTTAGTGGGATATATTTATGTGGTTCGCAGTCACTTCCGTGTATAGTTAAGTTATTGCTAGCCGTCCCGGTGTAGGAATGGCTTCCAGGAATACTCCTACCGCCCACTGTGCCGACTCACCCGGCGTCGTGACACGAAGGTGCAGGGCCAGAGGTCGTATCGCGATATGAACGTGTCCTACGGCGCCCGGCACCGGAAGTATGTGGGTAGTGGAGGAGAAACAAGGTTTGAAATGTACGGAGCCAGAAGCTAGTCTGTGGAAAATTCTTCCAATCATCAGACGTGTAAAATTGTAAGCGGAGGATTCGGTTCTCATCGACGCCTAGTCAAAACGGAAGTTCTCTCCTGTCAGGAATATACTCGATAATGCAGCGTATACAATTATAAACGCACCATACATTTTTTTTCTTTTTTGATGGGAATCGCGCGAAATAGAATTTATCAGAATTCCTGTGTTTGTAGGGCACAAACCTGTAGCAGTACTACAAACAGCGAGTACGTCTGTGTGTGAAGTCGCATGTTTTATGCATCCCAACTATCAATAATAAAAAACAAATTTCGATCAACCATGCTAGAGGAAAGACTGAATTATCTTTCTATTCTCTCTATAGAAAATAATATTACAAAATCGTTGTCATATGAAGAGGCGATCAAAGAGTATGCAGCCAAAAAATGTAGGGAAAAAGTATTATAGAGGTGTGTCAGGCAGTTAATTAATAAAAATATTATGTTATTTTTCTGGATTTTGTGATGTTTGTGGTATTTGTCAGCTTTTTAAAATTTGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCAAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1B | Ets97D | 487 | 495 | + | 16.05 | ACCGGAAGT |
| Arthur1B | ELK1::HOXA1 | 487 | 500 | + | 16.00 | ACCGGAAGTATGTG |
| Arthur1B | LHY | 139 | 147 | + | 15.86 | AGATATTTT |
| Arthur1B | pnt | 487 | 495 | + | 15.85 | ACCGGAAGT |
| Arthur1B | ETV3 | 487 | 495 | + | 15.85 | ACCGGAAGT |
| Arthur1B | Bgb::run | 147 | 155 | + | 15.80 | TAACCGCAA |
| Arthur1B | skn-1 | 1058 | 1071 | - | 15.79 | AAAAAGCTGACAAA |
| Arthur1B | ETS2 | 487 | 495 | + | 15.73 | ACCGGAAGT |
| Arthur1B | ets-7 | 486 | 495 | + | 15.69 | CACCGGAAGT |
| Arthur1B | IRF7 | 1115 | 1127 | - | 15.68 | CGAAAGTGAATAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
