Arthur1B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000071 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 1225 |
| Kimura value | 25.66 |
| Tau index | 0.9813 |
| Description | hAT-Tip100 DNA transposon, Arthur1B subfamily |
| Comment | Arthur1B has 8 bp TSDs and 11 bp TIRs. Positions 1-831 and 829-1226 correspond to positions 1-831 and 3551-3947 of the autonomous Arthur1 element. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTTCCAAGGCCCTGGGAGGGGCCCTAGCAATGTGTTCACATGGTCATATGTTTTTGTAAAATTTGCAAAAGTAAGATATTTTAACCGCAATCGGTTAAGACCGCTGTCTCTTTCCACTCCGACTTCCCCTCCGTCACACTTCCCCTCGTGTCGGGTGGCGTTGGAGTGGCCGCGGGCATTTTTGGGATCCGGCTAAGGGGAAGTTGAGTTGGGGATACATTTAGTTTGGGTTTAGTGGGATATATTTATGTGGTTCGCAGTCACTTCCGTGTATAGTTAAGTTATTGCTAGCCGTCCCGGTGTAGGAATGGCTTCCAGGAATACTCCTACCGCCCACTGTGCCGACTCACCCGGCGTCGTGACACGAAGGTGCAGGGCCAGAGGTCGTATCGCGATATGAACGTGTCCTACGGCGCCCGGCACCGGAAGTATGTGGGTAGTGGAGGAGAAACAAGGTTTGAAATGTACGGAGCCAGAAGCTAGTCTGTGGAAAATTCTTCCAATCATCAGACGTGTAAAATTGTAAGCGGAGGATTCGGTTCTCATCGACGCCTAGTCAAAACGGAAGTTCTCTCCTGTCAGGAATATACTCGATAATGCAGCGTATACAATTATAAACGCACCATACATTTTTTTTCTTTTTTGATGGGAATCGCGCGAAATAGAATTTATCAGAATTCCTGTGTTTGTAGGGCACAAACCTGTAGCAGTACTACAAACAGCGAGTACGTCTGTGTGTGAAGTCGCATGTTTTATGCATCCCAACTATCAATAATAAAAAACAAATTTCGATCAACCATGCTAGAGGAAAGACTGAATTATCTTTCTATTCTCTCTATAGAAAATAATATTACAAAATCGTTGTCATATGAAGAGGCGATCAAAGAGTATGCAGCCAAAAAATGTAGGGAAAAAGTATTATAGAGGTGTGTCAGGCAGTTAATTAATAAAAATATTATGTTATTTTTCTGGATTTTGTGATGTTTGTGGTATTTGTCAGCTTTTTAAAATTTGTAATTTGTTGTGATTTCTTTTCTCATTCTAAATAAATATTCACTTTCGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCAAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1B | DOF5.8 | 690 | 708 | + | 16.50 | ATACATTTTTTTTCTTTTT |
| Arthur1B | TCX6 | 1068 | 1082 | + | 16.40 | TTTTAAAATTTGTAA |
| Arthur1B | RVE7 | 139 | 147 | - | 16.38 | AAAATATCT |
| Arthur1B | ERF | 487 | 495 | + | 16.29 | ACCGGAAGT |
| Arthur1B | RVE6 | 139 | 147 | + | 16.23 | AGATATTTT |
| Arthur1B | RVE5 | 139 | 147 | + | 16.21 | AGATATTTT |
| Arthur1B | FLI1 | 487 | 495 | + | 16.09 | ACCGGAAGT |
| Arthur1B | efl-1 | 719 | 728 | + | 16.09 | CGCGCGAAAT |
| Arthur1B | MAZ | 79 | 86 | - | 16.08 | CCCCTCCC |
| Arthur1B | RVE8 | 139 | 147 | + | 16.08 | AGATATTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
