Arthur1A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000070 |
|---|---|
| TE superfamily | Tip100 |
| TE class | DNA |
| Species | Eutheria |
| Length | 177 |
| Kimura value | 25.80 |
| Tau index | 0.0000 |
| Description | hAT-Tip100 DNA transposon, Arthur1A subfamily |
| Comment | Arthur1A has 8 bp TSDs and 12 bp TIRs. Positions 1-79 and 79-177 correspond to 1-79 & 3849-3947 of the autonomous Arthur1. |
| Sequence |
CAGAGGCGGATTTACCGTGAAGCTAATGAAGCTTAAGCTTCAGGGCCCCTCACTTGCACGGGCCCCTTCCAAGGCCCTGTACCTAATTTTGTATTCGTAATTTTGTATTCTTTTTCTTAAAGAGGGCCCCCCAAATTGTATAAGCTTCAGGCCCCACAAAACCTGGATCCGCCCCTG
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| Arthur1A | btd | 168 | 176 | - | 14.64 | AGGGGCGGA |
| Arthur1A | Glyma19g26560.1 | 150 | 157 | + | 14.23 | GGCCCCAC |
| Arthur1A | GLYMA19G26560 | 150 | 157 | + | 14.23 | GGCCCCAC |
| Arthur1A | TB1 | 125 | 133 | + | 14.18 | GGCCCCCCA |
| Arthur1A | LjSGA_053525.1 | 150 | 157 | + | 14.06 | GGCCCCAC |
| Arthur1A | PLAGL2 | 43 | 50 | + | 13.61 | GGGCCCCT |
| Arthur1A | PLAGL2 | 60 | 67 | + | 13.61 | GGGCCCCT |
| Arthur1A | ETV5::FIGLA | 160 | 173 | - | 13.48 | GGCGGATCCAGGTT |
| Arthur1A | TCP19 | 150 | 157 | + | 13.44 | GGCCCCAC |
| Arthur1A | MYB80 | 78 | 89 | + | 13.20 | TGTACCTAATTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
