AluYf1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001317 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Catarrhini |
| Length | 311 |
| Kimura value | 4.00 |
| Tau index | 0.7918 |
| Description | AluYf1 subfamily |
| Comment | Intermediate between AluY and AluYf4. Identified both in human and gibbon. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYf1 | DOF5.1 | 293 | 311 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYf1 | DOF3.6 | 279 | 299 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluYf1 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYf1 | Spps | 208 | 218 | - | 14.75 | GCTCCGCCTCC |
| AluYf1 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYf1 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYf1 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYf1 | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
| AluYf1 | RPN4 | 145 | 151 | + | 13.80 | GGTGGCG |
| AluYf1 | GAL4 | 236 | 250 | + | 13.72 | CGCGCCACTGCACTC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
