AluYf1
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001317 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Catarrhini |
| Length | 311 |
| Kimura value | 4.00 |
| Tau index | 0.7918 |
| Description | AluYf1 subfamily |
| Comment | Intermediate between AluY and AluYf4. Identified both in human and gibbon. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGAGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYf1 | ZNF460 | 172 | 187 | - | 28.48 | GCCTCAGCCTCCCGAG |
| AluYf1 | ZNF460 | 38 | 53 | - | 22.88 | GCCTCGGCCTCCCAAA |
| AluYf1 | ZNF460 | 204 | 219 | - | 22.67 | AGCTCCGCCTCCCGGG |
| AluYf1 | DOF3.6 | 282 | 302 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYf1 | DOF3.6 | 283 | 303 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYf1 | DOF3.6 | 284 | 304 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYf1 | DOF3.6 | 285 | 305 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYf1 | DOF3.6 | 286 | 306 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYf1 | DOF3.6 | 287 | 307 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYf1 | DOF3.6 | 288 | 308 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
