AluYc
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000057 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominoidea |
| Length | 299 |
| Kimura value | 4.19 |
| Tau index | 0.9319 |
| Description | AluYc subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYc | DOF5.1 | 271 | 289 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 272 | 290 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 273 | 291 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 274 | 292 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 275 | 293 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 276 | 294 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 277 | 295 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 278 | 296 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 279 | 297 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYc | DOF5.1 | 280 | 298 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
