AluYc
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000057 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Hominoidea |
| Length | 299 |
| Kimura value | 4.19 |
| Tau index | 0.9319 |
| Description | AluYc subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYc | ZNF460 | 160 | 175 | - | 28.48 | GCCTCAGCCTCCCGAG |
| AluYc | ZNF460 | 38 | 53 | - | 22.88 | GCCTCGGCCTCCCAAA |
| AluYc | ZNF460 | 192 | 207 | - | 22.67 | AGCTCCGCCTCCCGGG |
| AluYc | DOF3.6 | 270 | 290 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYc | DOF3.6 | 271 | 291 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYc | DOF3.6 | 272 | 292 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYc | DOF3.6 | 273 | 293 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYc | DOF3.6 | 274 | 294 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYc | DOF3.6 | 275 | 295 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYc | DOF3.6 | 276 | 296 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
