AluYb9
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000056 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 318 |
| Kimura value | 2.69 |
| Tau index | 0.9736 |
| Description | AluYb9 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYb9 | Xrp1 | 234 | 243 | - | 15.34 | GTGGCGCAAT |
| AluYb9 | ZNF135 | 69 | 82 | - | 14.93 | TCTCGATCTCCTGA |
| AluYb9 | ATF2 | 63 | 72 | + | 14.65 | ATGAGGTCAG |
| AluYb9 | ZNF257 | 183 | 192 | + | 14.53 | GAGGCAGGAG |
| AluYb9 | KLF3 | 139 | 148 | - | 14.43 | CACCGCGCCC |
| AluYb9 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluYb9 | ZNF460 | 204 | 219 | - | 14.34 | AGCTCCGCTTCCCGGG |
| AluYb9 | EREB71 | 139 | 148 | - | 14.22 | CACCGCGCCC |
| AluYb9 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
| AluYb9 | ZNF770 | 42 | 49 | - | 13.95 | CGGCCTCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
