AluYb9
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000056 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 318 |
| Kimura value | 2.69 |
| Tau index | 0.9736 |
| Description | AluYb9 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYb9 | ZNF460 | 172 | 187 | - | 25.40 | GCCTCAGCCTCCCCAG |
| AluYb9 | ZNF460 | 38 | 53 | - | 22.88 | GCCTCGGCCTCCCAAA |
| AluYb9 | DOF3.6 | 289 | 309 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 290 | 310 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 291 | 311 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 292 | 312 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 293 | 313 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 294 | 314 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 295 | 315 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 296 | 316 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
