AluYb9
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000056 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 318 |
| Kimura value | 2.69 |
| Tau index | 0.9736 |
| Description | AluYb9 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYb9 | BPC1 | 293 | 316 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYb9 | BPC1 | 294 | 317 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYb9 | BPC1 | 295 | 318 | + | -0.12 | AAAAAAAAAAAAAAAAAAAAAAAA |
| AluYb9 | Nr2F6 | 57 | 71 | + | -1.11 | TGGATCATGAGGTCA |
| AluYb9 | BPC1 | 288 | 311 | + | -2.03 | CAAAAAAAAAAAAAAAAAAAAAAA |
| AluYb9 | Rarb | 56 | 71 | + | -2.17 | GTGGATCATGAGGTCA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
