AluYb9
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000056 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Homo_sapiens |
| Length | 318 |
| Kimura value | 2.69 |
| Tau index | 0.9736 |
| Description | AluYb9 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAAGCGGAGCTTGCAGTGAGCCGAGATTGCGCCACTGCAGTCCGCAGTCCGGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluYb9 | DOF3.6 | 297 | 317 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 298 | 318 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluYb9 | DOF3.6 | 288 | 308 | - | 19.33 | TTTTTTTTTTTTTTTTTTTTG |
| AluYb9 | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| AluYb9 | DOF3.6 | 287 | 307 | - | 17.41 | TTTTTTTTTTTTTTTTTTTGA |
| AluYb9 | ZNF213 | 256 | 267 | - | 17.08 | GCCCAGGCCGGA |
| AluYb9 | Zfx | 44 | 53 | - | 15.70 | GCCTCGGCCT |
| AluYb9 | DOF5.1 | 289 | 307 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYb9 | DOF5.1 | 290 | 308 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluYb9 | DOF5.1 | 291 | 309 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
