AluSq
Basic information Differential Expression Stage analysis Survival analysis Correlation analysisThe patients were classified into two groups based on the expression levels of TE families or the identification of TE-initiated transcripts. To assess the statistical difference in survival between the two groups, a log-rank test was performed. The hazard ratio (HR) and p-value were computed using the "survdiff" function from the "survival" package in R.
| Tumor | HR | P_value |
|---|---|---|
| TCGA-CHOL | 0.10 | 0.00e+00 |
| TCGA-LIHC | 1.89 | 1.00e-03 |
| TCGA-SARC | 0.40 | 3.00e-03 |
| TCGA-LUSC | 0.64 | 3.00e-03 |
| TCGA-CESC | 0.49 | 7.00e-03 |
| TCGA-SKCM | 2.17 | 0.02 |
| TCGA-LAML | 1.59 | 0.02 |
| TCGA-READ | 3.21 | 0.02 |
| TCGA-UCEC | 0.65 | 0.03 |
| TCGA-BRCA | 0.70 | 0.03 |