AluSg4
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000040 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 310 |
| Kimura value | 6.58 |
| Tau index | 0.6373 |
| Description | AluSg4 subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAGATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSg4 | DOF5.1 | 291 | 309 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSg4 | DOF5.1 | 292 | 310 | + | 15.65 | AAAAAAAAAAAAAAAAAAA |
| AluSg4 | DOF3.6 | 278 | 298 | - | 15.64 | TTTTTTTTTTTTTTTTTTGAG |
| AluSg4 | ZNF135 | 204 | 217 | - | 15.26 | CCTCCGCCTCCCGG |
| AluSg4 | ERF057 | 207 | 220 | - | 14.79 | CAACCTCCGCCTCC |
| AluSg4 | ZNF257 | 182 | 191 | + | 14.53 | GAGGCAGGAG |
| AluSg4 | KLF3 | 138 | 147 | - | 14.43 | CACCGCGCCC |
| AluSg4 | KLF3 | 5 | 14 | - | 14.43 | CACCGCGCCC |
| AluSg4 | EREB71 | 138 | 147 | - | 14.22 | CACCGCGCCC |
| AluSg4 | EREB71 | 5 | 14 | - | 14.22 | CACCGCGCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
