AluSg
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000039 |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Species | Simiiformes |
| Length | 310 |
| Kimura value | 5.97 |
| Tau index | 0.7845 |
| Description | AluSg subfamily |
| Comment | Alu elements derive from a pair of internally-deleted 7SL RNA monomers that are joined by an A-rich linker. This element is described in "Origin and evolution of Alu repetitive elements"; Jurka J.; Molecular Biology Intelligence Unit:The impact of short interspersed elements (SINEs) on the host genome (ed. Richard J. Maraia), R.G. Landes Company, Austin, pp.25-41 (1995) |
| Sequence |
GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| AluSg | DOF3.6 | 288 | 308 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSg | DOF3.6 | 289 | 309 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSg | DOF3.6 | 290 | 310 | - | 21.52 | TTTTTTTTTTTTTTTTTTTTT |
| AluSg | DOF3.6 | 280 | 300 | - | 19.33 | TTTTTTTTTTTTTTTTTTTTG |
| AluSg | ZNF135 | 39 | 52 | - | 19.08 | CCTCGGCCTCCCAA |
| AluSg | ZNF213 | 248 | 259 | - | 18.09 | GCCCAGGCTGGA |
| AluSg | DOF3.6 | 279 | 299 | - | 17.41 | TTTTTTTTTTTTTTTTTTTGA |
| AluSg | ZNF135 | 172 | 185 | - | 16.04 | CCTCAGCCTCCCGA |
| AluSg | ZNF135 | 69 | 82 | - | 15.84 | TCTCGAACTCCTGA |
| AluSg | Zfx | 44 | 53 | - | 15.70 | GCCTCGGCCT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
