TE_72
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | LTR36 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | -, UTS2 |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 2.86 |
| Counts of samples | TCGA_tumor:1552; TCGA_normal:56; GTEx:555 |
| TSS | chr1(-):7913326 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_72.11 | UTS2 | Chimeric | Non-coding | Non-coding | chr1(-):7843930,7843950,7846692,7846766,7847804,7847882,7849640,7849683,7850812,7850922,7852901,7853505,7873497,7873543,7913181,7913327 |
| teRNA_72.12 | UTS2 | Chimeric | Non-coding | Non-coding | chr1(-):7847862,7847882,7849640,7849683,7850812,7850922,7852901,7853505,7873497,7873543,7913181,7913327 |
| teRNA_72.13 | UTS2 | Chimeric | Non-coding | Non-coding | chr1(-):7843930,7843950,7846692,7846766,7847804,7847882,7849640,7849683,7850812,7850922,7852901,7853118,7853307,7853505,7888504,7890122,7913181,7913327 |
| teRNA_72.14 | UTS2 | Chimeric | Other | MLSVSLYEHPNPTPALEELCAYSYYPQSAGEEIKKQREVTWLRAHSWLEAGQDSQPESLSRAPWIYSHPQDNSQNVHSQPLCSSNHPTANCSWLTQVFLNLSDGFHLDTTGFVRSSDEISHLSCGLTK* | chr1(-):7847862,7847882,7849640,7849683,7850812,7850922,7852901,7852923,7853307,7853505,7888504,7890122,7913181,7913327 |
| teRNA_72.15 | UTS2 | Chimeric | Non-coding | Non-coding | chr1(-):7843930,7843950,7846692,7846766,7847804,7847882,7849640,7849683,7850812,7850922,7913181,7913327 |
| teRNA_72.16 | UTS2 | Chimeric | Non-coding | Non-coding | chr1(-):7847862,7847882,7849640,7849683,7850812,7850922,7913181,7913327 |
| teRNA_72.17 | UTS2 | Chimeric | Other | MYKLASCCLLFIGFLNPLLSLPLLDSREISFQLSAPHEDARLTPEELERASLLQILPEMLGAERGDILRKADSSTNIFNPRGNLRKFQDFSGQDPNILLSHLLARIWKPYKKQRRKLRQDLRLWKKEPGLRIFKNYVWV* | chr1(-):7843930,7843950,7846692,7846766,7847804,7847882,7849640,7849683,7850812,7850922,7852901,7853118,7853307,7853505,7878581,7878694,7913181,7913327 |
| teRNA_72.18 | UTS2 | Chimeric | Non-coding | Non-coding | chr1(-):7847862,7847882,7849640,7849683,7850812,7850922,7852901,7852923,7853307,7853505,7878581,7878694,7913181,7913327 |
| teRNA_72.19 | - | Intergenic | Non-coding | Non-coding | chr1(-):7873523,7873543,7878581,7878694,7913181,7913327 |
| teRNA_72.20 | UTS2 | Chimeric | Other | MYKLASCCLLFIGFLNPLLSLPLLDSREISFQLSAPHEDARLTPEELERASLLQILPEMLGAERGDILRKADSSTNIFNPRGNLRKFQDFSGQDPNILLSHLLARIWKPYKKQRRKLRQDLRLWKKEPGLRIFKNYVWV* | chr1(-):7843930,7843950,7846692,7846766,7847804,7847882,7849640,7849683,7850812,7850922,7852901,7853505,7878581,7878694,7913181,7913327 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
