TE_37916
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | OPHN1 |
| Class | Chimeric |
| Coding | Non-coding, Truncated, Chimeric_truncated, Other |
| Tumor-specific score | 182.97 |
| Counts of samples | TCGA_tumor:486; TCGA_normal:2; GTEx:0 |
| TSS | chrX(-):68217315 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_37916.21 | OPHN1 | Chimeric | Truncated | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEDEIQHQTPNGTITSSIEPPKPPQHPKLPIQRSGETDPGRKSPSRPILDGKLEPCPEVDVGKLVSRLQDGGTKITPKATNGPMPGSGPTKTPSFHIKRPAPRPLAHHKEGDADSFSKVRPPGEKPTIIRPPVRPPDPPCRAATPQKPEPKPDIVAGNAGEITSSVVASRTRFFETASRKTGSSQGRLPGDES* | chrX(-):68047143,68047163,68048416,68048457,68052540,68052590,68053645,68053810,68063854,68064177,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213972,68216707,68217316 |
| teRNA_37916.22 | OPHN1 | Chimeric | Other | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEGFKSLGL | chrX(-):68047143,68047163,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213972,68216707,68217316 |
| teRNA_37916.23 | OPHN1 | Chimeric | Other | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEGDADSFSKVRPPGEKPTIIRPPVRPPDPPCRAATPQKPEPKPDIVAGNAGEITSSVVASRTRFFETASRKTGSSQGRLPGDES* | chrX(-):68047143,68047163,68048416,68048457,68052540,68052590,68053645,68053810,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213972,68216707,68217316 |
| teRNA_37916.24 | OPHN1 | Chimeric | Truncated | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEDEIQHQTPNGTITSSIEPPKPPQHPKLPIQRSGETDPGRKSPSRPILDGKLEPCPEVDVGKLVSRLQDGGTKITPKATNGPMPGSGPTKTPSFHIKRPAPRPLAHHKEGDADSFSKVRPPGEKPTIIRPPVRPPDPPCRAATPQKPEPKPDIVAGNAGEITSSVVASRTRFFETASRKTGSSQGRLPGDES* | chrX(-):68047143,68047163,68048416,68048457,68052540,68052590,68053645,68053810,68063854,68064177,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68213862,68213972,68216707,68217316 |
| teRNA_37916.25 | OPHN1 | Chimeric | Non-coding | Non-coding | chrX(-):68210262,68210282,68212108,68212212,68213862,68213972,68216707,68217316 |
| teRNA_37916.26 | OPHN1 | Chimeric | Non-coding | Non-coding | chrX(-):68212192,68212212,68213862,68213972,68216707,68217316 |
| teRNA_37916.27 | OPHN1 | Chimeric | Other | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKVDELAQW | chrX(-):67949565,67949585,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213968,68216707,68217316 |
| teRNA_37916.28 | OPHN1 | Chimeric | Truncated | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEDEIQHQTPNGTITSSIEPPKPPQHPKLPIQRSGETDPGRKSPSRPILDGKLEPCPEVDVGKLVSRLQDGGTKITPKATNGPMPGSGPTKTPSFHIKRPAPRPLAHHKEGDADSFSKVRPPGEKPTIIRPPVRPPDPPCRAATPQKPEPKPDIVAGNAGEITSSVVASRTRFFETASRKTGSSQGRLPGDES* | chrX(-):68047143,68047163,68048416,68048457,68052540,68052590,68053645,68053810,68063854,68064177,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213968,68216707,68217316 |
| teRNA_37916.29 | OPHN1 | Chimeric | Other | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEGFKSLGL | chrX(-):68047143,68047163,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213968,68216707,68217316 |
| teRNA_37916.30 | OPHN1 | Chimeric | Other | MEELKKRMKEAPQTCKLPGQPTIEGYLYTQEKWALGISWVKYYCQYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCVRRKTESIDKRFCFDIETNERPGTITLQALSEANRRLWMEAMDGKEPIYHSPITKQQEMELNEVGFKFVRKCINIIETKGIKTEGLYRTVGSNIQVQKLLNAFFDPKCPGDVDFHNSDWDIKTITSSLKFYLRNLSEPVMTYRLHKELVSAAKSDNLDYRLGAIHSLVYKLPEKNREMLELLIRHLVNVCEHSKENLMTPSNMGVIFGPTLMRAQEDTVAAMMNIKFQNIVVEILIEHFGKIYLGPPEESAAPPVPPPRVTARRHKPITISKRLLRERTVFYTSSLDESEGDADSFSKVRPPGEKPTIIRPPVRPPDPPCRAATPQKPEPKPDIVAGNAGEITSSVVASRTRFFETASRKTGSSQGRLPGDES* | chrX(-):68047143,68047163,68048416,68048457,68052540,68052590,68053645,68053810,68073152,68073299,68096870,68097029,68111854,68111959,68113181,68113239,68119248,68119332,68192919,68192993,68193890,68193952,68194465,68194498,68197186,68197264,68201619,68201710,68206573,68206673,68210153,68210282,68212108,68212212,68213862,68213968,68216707,68217316 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
