TE_34
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluSq |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | GNB1 |
| Class | Chimeric |
| Coding | Non-coding, Annoated, Truncated, Chimeric_truncated, Other |
| Tumor-specific score | 0.60 |
| Counts of samples | TCGA_tumor:329; TCGA_normal:11; GTEx:610 |
| TSS | chr1(-):1888747 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_34.11 | GNB1 | Chimeric | Non-coding | Non-coding | chr1(-):1825479,1825499,1839190,1839238,1888555,1888748 |
| teRNA_34.12 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1847878,1848036,1848461,1848529,1852570,1852680,1853152,1853297,1888555,1888748 |
| teRNA_34.13 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1852570,1852680,1853152,1853297,1888555,1888748 |
| teRNA_34.14 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1853152,1853297,1888555,1888748 |
| teRNA_34.15 | GNB1 | Chimeric | Annoated | MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN* | chr1(-):1787033,1787053,1787322,1787437,1789053,1789269,1790395,1790596,1793245,1793311,1804419,1804581,1806475,1806538,1815756,1815862,1817837,1817875,1825397,1825499,1839190,1839238,1847878,1848036,1848461,1848529,1853152,1853297,1888555,1888748 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
