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TE_3340

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

TE family L1HS_5end
TE superfamily L1
TE order LINE
Gene SYT14
Class Chimeric
Coding Non-coding, Other
Tumor-specific score 205.70
Counts of samples TCGA_tumor:364; TCGA_normal:1; GTEx:0
TSS chr1(+):209919436


Transcript isoforms

Transcript_ID Gene Class Coding ORF Position
teRNA_3340.11 SYT14 Chimeric Other MAFFRNFQQNLPSVSSLVDTISSAVEDLTTAVGEVSYALTDSVAEQVTSMMSGFRPEEESSVAEEAVDTSKQKNAGLTEVSKNTNCQKTQANLEHRAKQINTCKTSLKQDQGIHEERVFKHVNDRQQTLSEYQDTGNTGDSSLKGYMNNGGISVIRQNTRAGSICQELESTDRCKTIGVGISNNGKNDLKEVGYQEMKGNQKNANGINKLYEQKKYVGTDNCKKEEYSKSRHVYLGRDQENMGHFNKCKHLPDLGHSDHLKKAEKCVKSKASKGNECSGNECSLKDILTSNRHMTQKSIIKEDIHPAPSTNSKDKLSGKIEEQINSTKYCKVNEDIKPKKTEAISAKKGTAKSKDEKYSKIIPEKDNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLT chr1(+):209919437,209919479,209952709,209952756,209953055,209953259,210013633,210013797,210015181,210017099,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210160729,210160749
teRNA_3340.12 SYT14 Chimeric Other MNLSVLEKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTTVSPEAVGFLSAVGVFIILMLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNGLFCCLKHLIGGQVYIIRDTYVKLT chr1(+):209919437,209919479,209952709,209952756,209965893,209966013,210013633,210013797,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210159421,210159477,210160729,210160749
teRNA_3340.13 SYT14 Chimeric Other MLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLT chr1(+):209919437,209919479,209952709,209952756,210013633,210013797,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210160729,210160749
teRNA_3340.14 SYT14 Chimeric Other MLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWAVTPK* chr1(+):209919437,209919479,209952709,209952756,209953055,209953259,210013633,210013797,210021039,210021254,210094322,210094593,210100012,210100190,210155721,210155910,210160729,210160749
teRNA_3340.15 SYT14 Chimeric Non-coding Non-coding chr1(+):209919437,209919564,209930435,209930783,209952709,209952729
teRNA_3340.16 SYT14 Chimeric Other MLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLT chr1(+):209919437,209919564,209930435,209930783,209952709,209952756,209953055,209953259,210013633,210013797,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210160729,210160749
teRNA_3340.17 SYT14 Chimeric Other MAFFRNFQQNLPSVSSLVDTISSAVEDLTTAVGEVSYALTDSVAEQVTSMMSGFRPEEESSVAEEAVDTSKQKNAGLTEVSKNTNCQKTQANLEHRAKQINTCKTSLKQDQGIHEERVFKHVNDRQQTLSEYQDTGNTGDSSLKGYMNNGGISVIRQNTRAGSICQELESTDRCKTIGVGISNNGKNDLKEVGYQEMKGNQKNANGINKLYEQKKYVGTDNCKKEEYSKSRHVYLGRDQENMGHFNKCKHLPDLGHSDHLKKAEKCVKSKASKGNECSGNECSLKDILTSNRHMTQKSIIKEDIHPAPSTNSKDKLSGKIEEQINSTKYCKVNEDIKPKKTEAISAKKGTAKSKDEKYSKIIPEKDNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNGLFCCLKHLIGGQVYIIRDTYVKLT chr1(+):209919437,209919564,209930435,209930783,209952709,209952756,210013633,210013797,210015684,210017099,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210159421,210159477,210160729,210160749
teRNA_3340.18 SYT14 Chimeric Other MLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNGLFCCLKHLIGGQVYIIRDTYVKLT chr1(+):209919437,209919564,209930435,209930783,209952709,209952756,210013633,210013797,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210159421,210159477,210160729,210160749
teRNA_3340.19 SYT14 Chimeric Other MAFFRNFQQNLPSVSSLVDTISSAVEDLTTAVGEVSYALTDSVAEQVTSMMSGFRPEEESSVAEEAVDTSKQKNAGLTEVSKNTNCQKTQANLEHRAKQINTCKTSLKQDQGIHEERVFKHVNDRQQTLSEYQDTGNTGDSSLKGYMNNGGISVIRQNTRAGSICQELESTDRCKTIGVGISNNGKNDLKEVGYQEMKGNQKNANGINKLYEQKKYVGTDNCKKEEYSKSRHVYLGRDQENMGHFNKCKHLPDLGHSDHLKKAEKCVKSKASKGNECSGNECSLKDILTSNRHMTQKSIIKEDIHPAPSTNSKDKLSGKIEEQINSTKYCKVNEDIKPKKTEAISAKKGTAKSKDEKYSKIIPEKDNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNTYVKLT chr1(+):209919437,209919564,209930435,209930783,209952709,209952756,209953055,209953259,210013633,210013797,210015181,210017099,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210160729,210160749
teRNA_3340.20 SYT14 Chimeric Other MNLSVLEKIGYFSVARLEYSGTILAHCNFRLLGSNDSSASASQVTGTTVSPEAVGFLSAVGVFIILMLLLFLYINKKFCFENVGGFPDLGSEYSTRKNSQDKIYNSYMDKDEHGSSSESEDEALGKYHEALSRTHNSRLPLADSRQRNYAWETRQKYSPLSAEYDGYSSEASIDEGNCIQRMRRTPPLDELQPPPYQDDSGSPHLSCTPSEIGDSKCEFSHCSNSPRCSYNKCPSEGSTGHEIESFHNKGYEEDVPSDSTAVLSPEDMSAQGSSSQLPKPFDPEPEAKYGTLDVTFDYDSQEQKLLVTVTAVTDIPTYNRTGGNSWQVHLVLLPIKKQRAKTSIQRGPCPVFTETFKFNHVESEMIGNYAVRFRLYGVHRMKKEKIVGEKIFYLTKLNLQGKMSLPVILEPSYNHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRLSAEVIKGSHFKNLAANRPPNGLFCCLKHLIGGQVYIIRDTYVKLT chr1(+):209919437,209919564,209930435,209930783,209952709,209952756,209965893,209966013,210013633,210013797,210021039,210021254,210094322,210094593,210100012,210100461,210155721,210155910,210159421,210159477,210160729,210160749

GTEx

The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.



TCGA

The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).



GTEx

The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.



TCGA

The expression of TE-initiated transcript across 33 cancer types from The Cancer Genome Atlas (TCGA).