TE_27920
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MER50 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | PSMC1, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 156.67 |
| Counts of samples | TCGA_tumor:138; TCGA_normal:0; GTEx:0 |
| TSS | chr14(+):90198763 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_27920.11 | PSMC1 | Chimeric | Non-coding | Non-coding | chr14(+):90198764,90198818,90239351,90239482,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263338 |
| teRNA_27920.12 | PSMC1 | Chimeric | Other | MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG | chr14(+):90198764,90198818,90239351,90239482,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263442,90263662,90263847,90264041,90264169,90265070,90265166,90268224,90268413,90269397,90269548,90270198,90270352,90272273,90272293 |
| teRNA_27920.13 | PSMC1 | Chimeric | Non-coding | Non-coding | chr14(+):90198764,90198818,90239351,90239482,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263442,90263670,90263690 |
| teRNA_27920.14 | PSMC1 | Chimeric | Non-coding | Non-coding | chr14(+):90198764,90198818,90239351,90239482,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263442,90263662,90263682 |
| teRNA_27920.15 | PSMC1 | Chimeric | Other | MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG | chr14(+):90198764,90198818,90239351,90239482,90256449,90256600,90259160,90259213,90263318,90263442,90263662,90263847,90264041,90264169,90265070,90265166,90268224,90268413,90269397,90269548,90270198,90270352,90272273,90272293 |
| teRNA_27920.16 | PSMC1 | Chimeric | Non-coding | Non-coding | chr14(+):90198764,90198818,90239351,90239482,90247660,90248095,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263338 |
| teRNA_27920.17 | PSMC1 | Chimeric | Other | MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG | chr14(+):90198764,90198818,90239351,90239482,90247660,90248095,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263442,90263662,90263847,90264041,90264169,90265070,90265166,90268224,90268413,90269397,90269548,90270198,90270352,90272273,90272293 |
| teRNA_27920.18 | PSMC1 | Chimeric | Non-coding | Non-coding | chr14(+):90198764,90198818,90239351,90239482,90247660,90248095,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263442,90263670,90263690 |
| teRNA_27920.19 | PSMC1 | Chimeric | Non-coding | Non-coding | chr14(+):90198764,90198818,90239351,90239482,90247660,90248095,90256449,90256600,90259160,90259213,90260115,90260211,90263318,90263442,90263662,90263682 |
| teRNA_27920.20 | PSMC1 | Chimeric | Other | MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG | chr14(+):90198764,90198818,90239351,90239482,90247660,90248095,90256449,90256600,90259160,90259213,90263318,90263442,90263662,90263847,90264041,90264169,90265070,90265166,90268224,90268413,90269397,90269548,90270198,90270352,90272273,90272293 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
