TE_22
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MLT1B |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 3.17 |
| Counts of samples | TCGA_tumor:1466; TCGA_normal:154; GTEx:367 |
| TSS | chr1(-):1132948 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_22.51 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127398,1127418,1128491,1132646,1132905,1132949 |
| teRNA_22.52 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123548,1123568,1124237,1127432,1128491,1132646,1132905,1132949 |
| teRNA_22.53 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127412,1127432,1128491,1132646,1132905,1132949 |
| teRNA_22.54 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1124094,1124114,1124139,1127432,1128491,1132646,1132905,1132949 |
| teRNA_22.55 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127412,1127432,1128491,1132367,1132905,1132949 |
| teRNA_22.56 | - | Intergenic | Non-coding | Non-coding | chr1(-):1123649,1123669,1123862,1123918,1123953,1127432,1132905,1132949 |
| teRNA_22.57 | - | Intergenic | Other | MCVHRCVPRCVSRCVCRCVPRRVCIGGCPSVCAGVCSGVYAVVCAGVCTGVCSQVCMQWCAQVCAQVCGVCAGVCAQECAQVCAQVCVACAQVCAGVCPGVCSSVCRVCAGVCAGVCSGVCSSVCRYVLRCVRRCVLRCVQMCAQVYVQVCVVCTGVCMGVWVGCAQVCV* | chr1(-):1123494,1123514,1123595,1123940,1123975,1127432,1132905,1132949 |
| teRNA_22.58 | - | Intergenic | Non-coding | Non-coding | chr1(-):1123841,1123861,1123919,1127432,1132905,1132949 |
| teRNA_22.59 | - | Intergenic | Non-coding | Non-coding | chr1(-):1123482,1123502,1123874,1123940,1124065,1127432,1132905,1132949 |
| teRNA_22.60 | - | Intergenic | Non-coding | Non-coding | chr1(-):1123661,1123681,1123782,1127432,1132905,1132949 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
