TE_22
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MLT1B |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 3.17 |
| Counts of samples | TCGA_tumor:1466; TCGA_normal:154; GTEx:367 |
| TSS | chr1(-):1132948 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_22.41 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123649,1123669,1123953,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.42 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123649,1123669,1123782,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.43 | - | Intergenic | Non-coding | Non-coding | chr1(-):1129997,1130017,1131617,1131846,1132905,1132949 |
| teRNA_22.44 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123671,1123691,1123782,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.45 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123865,1123885,1123931,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.46 | - | Intergenic | Non-coding | Non-coding | chr1(-):1127412,1127432,1129358,1131846,1132905,1132949 |
| teRNA_22.47 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123783,1123803,1124139,1131846,1132905,1132949 |
| teRNA_22.48 | - | Intergenic | Non-coding | Non-coding | chr1(-):1130000,1130020,1131617,1132649,1132905,1132949 |
| teRNA_22.49 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127412,1127432,1128491,1131846,1132319,1132649,1132905,1132949 |
| teRNA_22.50 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127412,1127432,1128491,1132649,1132905,1132949 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
