TE_22
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MLT1B |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 3.17 |
| Counts of samples | TCGA_tumor:1466; TCGA_normal:154; GTEx:367 |
| TSS | chr1(-):1132948 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_22.21 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127412,1127432,1128491,1130020,1131617,1131892,1132905,1132949 |
| teRNA_22.22 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123482,1123502,1123660,1127432,1128491,1131892,1132905,1132949 |
| teRNA_22.23 | - | Intergenic | Non-coding | Non-coding | chr1(-):1129997,1130017,1131617,1131892,1132905,1132949 |
| teRNA_22.24 | - | Intergenic | Non-coding | Non-coding | chr1(-):1123494,1123514,1123595,1127432,1129358,1131892,1132905,1132949 |
| teRNA_22.25 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1127412,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.26 | - | Intergenic | Non-coding | Non-coding | chr1(-):1130000,1130020,1131617,1131846,1132905,1132949 |
| teRNA_22.27 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123494,1123514,1123595,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.28 | - | Intergenic | Other | METKRRPQKLSGKNPQKQVPYQGPGVGMPLPDPQQPREPGTLRRGFLNSQGSEGLGGGPPCALHRQLQLWAWWGPTPCTSRGAARGLFHQNTEKTRKGRCGARENPTQGRSNGTFVTRTTKPARRQPCPRPEGADQPRAGQEAPGGPSEIPGVPEFKSWGRV* | chr1(-):1129634,1129654,1129827,1131846,1132905,1132949 |
| teRNA_22.29 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1123482,1123502,1123569,1127432,1128491,1131846,1132905,1132949 |
| teRNA_22.30 | - | Intergenic | Other | MLTSITVSVSLDFPIPGPRRVQLPYTATAFCPSVAWPCVAQCRGSLSVSEAEGRLVPHSLCASQAALMLCAPNLCRTGFRPGQRRLCPHPRCSQCPRTLSTGINLVSLQELSARKCKSWLLSLSPPLRAPWLGHSQAPRNSGAFAAIFSYRNPQTPIIITGTQDPSFSRGAHGHPVAPSRHLRSGCGTPGPAHLASTALQAPADPHHPPANSRSRQPWGRPSG* | chr1(-):1124094,1124114,1124139,1127432,1128491,1131846,1132905,1132949 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
