TE_196
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L2 |
|---|---|
| TE superfamily | L2 |
| TE class | LINE |
| Gene | CAPZB |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 3.83 |
| Counts of samples | TCGA_tumor:410; TCGA_normal:45; GTEx:75 |
| TSS | chr1(-):19353613 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_196.11 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19339597,19339617,19342752,19342864,19344358,19345252,19352747,19352943,19353535,19353614 |
| teRNA_196.12 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19344414,19344434,19345187,19345252,19352747,19352943,19353535,19353614 |
| teRNA_196.13 | CAPZB | Chimeric | Non-coding | Non-coding | chr1(-):19342844,19342864,19344358,19344434,19345187,19345252,19352747,19352943,19353535,19353614 |
| teRNA_196.14 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19339597,19339617,19344358,19344434,19345187,19345252,19352747,19353264,19353535,19353614 |
| teRNA_196.15 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19339597,19339617,19342752,19342864,19344358,19344434,19345187,19345252,19352747,19353264,19353535,19353614 |
| teRNA_196.16 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19339597,19339617,19345187,19345252,19352747,19353264,19353535,19353614 |
| teRNA_196.17 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19339597,19339617,19344358,19345252,19352747,19353264,19353535,19353614 |
| teRNA_196.18 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19339597,19339617,19342752,19342864,19344358,19345252,19352747,19353264,19353535,19353614 |
| teRNA_196.19 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19344414,19344434,19345187,19345252,19352747,19353264,19353535,19353614 |
| teRNA_196.20 | CAPZB | Chimeric | Other | MTRAWIRQPWEGQRGQPCSREEGRLLGFGAVSPGPQCQALAPRAIPASISTLSKAPWVLSFPRVLWPSLPHPGSSGSCPSLCVAPGAPLSSCFPRPIWRRPPALACWHLAGVPSVGTSGYALCPLVPQCRRLVVGQWPGQSATLLGTWPASQPEHSQTRRCCLHLALPPSFSAFTSPTSNHQKMFLRDVNWKTRWRRMKL* | chr1(-):19342844,19342864,19344358,19344434,19345187,19345252,19352747,19353264,19353535,19353614 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
