TE_192
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | AluJb |
|---|---|
| TE superfamily | Alu |
| TE class | SINE |
| Gene | EMC1 |
| Class | Chimeric |
| Coding | Non-coding, Other |
| Tumor-specific score | 0.94 |
| Counts of samples | TCGA_tumor:516; TCGA_normal:41; GTEx:577 |
| TSS | chr1(-):19249721 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_192.21 | EMC1 | Chimeric | Other | MKTYRQQYVGKVKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWEITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKWVEHLPESDSIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHYALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKSSSSEDGSMGSFSEKSSSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKAAIQDGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSLYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSWELTIPPEVQRIVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVTGRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQSYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHAERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLD | chr1(-):19219462,19219482,19219569,19219698,19220764,19220848,19222624,19222834,19223396,19223569,19227313,19227450,19230844,19230963,19231261,19231422,19232624,19232773,19232936,19233135,19234180,19234188,19235130,19235252,19237142,19237238,19238017,19238139,19238795,19238857,19239231,19239302,19239818,19239985,19240297,19240446,19241016,19241142,19242345,19242473,19243614,19243707,19243950,19244015,19244906,19245027,19249605,19249722 |
| teRNA_192.22 | EMC1 | Chimeric | Non-coding | Non-coding | chr1(-):19242453,19242473,19243418,19243515,19243614,19243707,19243950,19244015,19244906,19245027,19249605,19249722 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
