TE_18781
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | LTR5_Hs |
|---|---|
| TE superfamily | ERV2 |
| TE class | LTR |
| Gene | ENSG00000248347, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 171.32 |
| Counts of samples | TCGA_tumor:151; TCGA_normal:0; GTEx:0 |
| TSS | chr8(-):47176187 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_18781.41 | ENSG00000248347 | Chimeric | Other | MSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47144742,47144853,47150110,47150216,47167264,47167477,47168740,47168978,47175930,47176188 |
| teRNA_18781.42 | - | Intergenic | Non-coding | Non-coding | chr8(-):47144624,47144644,47144742,47144853,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.43 | ENSG00000248347 | Chimeric | Other | MPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47133124,47133772,47134192,47136789,47138134,47138227,47144742,47144853,47146637,47146749,47150110,47150216,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.44 | ENSG00000248347 | Chimeric | Other | MPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47133124,47133772,47134192,47138227,47144742,47144853,47146637,47146749,47150110,47150216,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.45 | ENSG00000248347 | Chimeric | Other | MPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47133124,47133767,47136409,47136785,47144738,47144853,47146637,47146749,47150110,47150216,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.46 | ENSG00000248347 | Chimeric | Other | MPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47133124,47136785,47144738,47144853,47150110,47150216,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.47 | ENSG00000248347 | Chimeric | Other | MPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47133124,47133433,47133519,47133767,47136409,47138227,47144742,47144853,47146637,47146749,47150110,47150216,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.48 | - | Intergenic | Other | MPWPSVFCYRWSAVVQFRLTATLTSLAQVILPPQPPKQLGLQAPCGRCGVHSEEKVKHSRSLRTCWTGHCGSFGMTWDCALGKRQLLSTVLTAEEGASLQFRLSAAPQLFFLHCSSVWLQMKMTFSSQGVHCIVQIYCSFFIPSSVDGQVPLCCCE* | chr8(-):47136765,47136785,47144738,47144853,47146637,47146749,47150110,47150216,47167264,47167477,47168881,47168978,47175930,47176188 |
| teRNA_18781.49 | ENSG00000248347 | Chimeric | Other | MDRICQLFSDYKEKQMPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47144742,47144853,47150110,47150216,47167264,47167477,47168740,47168832,47168923,47168978,47175930,47176188 |
| teRNA_18781.50 | ENSG00000248347 | Chimeric | Other | MPKNCSENSNPEQDLKLTSEEEPQRLKGSENSQHEKMSQEPDINKDCDREVEEEMQRHRSNNVGISENLTDGATAGNGDDGLIPQRKSRKPENQQFPSTENEEYHRPEKKFNEKNTVKSEIHSVDDLDDITWPSEIASEDYDLPYPNYETFMLLTEQIKMDFNDSASLSKIQDAVLSDEHLLELKSNHCEQLTIEIEQMENMIHVLQKKLSETKETQLQLEHEKDEWEQELSTLGGGAKMAE* | chr8(-):47089764,47089784,47090709,47090806,47100929,47101192,47110410,47110551,47111169,47111199,47122207,47122373,47123417,47123461,47124848,47124918,47130312,47130382,47133124,47133767,47134192,47138227,47144742,47144853,47150110,47150216,47167264,47167477,47175930,47176188 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
