TE_176
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | MER39 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Gene | - |
| Class | Intergenic |
| Coding | Non-coding |
| Tumor-specific score | 2.62 |
| Counts of samples | TCGA_tumor:134; TCGA_normal:10; GTEx:47 |
| TSS | chr1(-):18298317 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_176.11 | - | Intergenic | Non-coding | Non-coding | chr1(-):18289510,18289530,18290504,18290630,18291055,18291126,18291739,18291799,18295687,18295762,18298240,18298318 |
| teRNA_176.12 | - | Intergenic | Non-coding | Non-coding | chr1(-):18291550,18291570,18291739,18291799,18295687,18295762,18298240,18298318 |
| teRNA_176.13 | - | Intergenic | Non-coding | Non-coding | chr1(-):18290610,18290630,18291055,18291126,18291739,18291799,18295687,18295762,18298240,18298318 |
| teRNA_176.14 | - | Intergenic | Non-coding | Non-coding | chr1(-):18289510,18289530,18291055,18291799,18298240,18298318 |
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GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
