TE_15542
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | COL28A1, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 204.19 |
| Counts of samples | TCGA_tumor:1086; TCGA_normal:5; GTEx:0 |
| TSS | chr7(-):7465478 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_15542.61 | - | Intergenic | Non-coding | Non-coding | chr7(-):7462367,7462387,7465032,7465479 |
| teRNA_15542.62 | COL28A1 | Chimeric | Other | MGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7465352,7465479 |
| teRNA_15542.63 | COL28A1 | Chimeric | Non-coding | Non-coding | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7465352,7465479 |
| teRNA_15542.64 | COL28A1 | Chimeric | Other | MGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7465437,7465479 |
| teRNA_15542.65 | COL28A1 | Chimeric | Other | MGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7465437,7465479 |
| teRNA_15542.66 | COL28A1 | Chimeric | Non-coding | Non-coding | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7465437,7465479 |
| teRNA_15542.67 | COL28A1 | Chimeric | Other | MGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7465437,7465479 |
| teRNA_15542.68 | COL28A1 | Chimeric | Other | MELQGRREKRGFREQEAQKDHLEKDSLAPRVTKARKGAKEIKDRGDFQGPKDQRVNRALWALLECLEHQFLDHLGQREIEEDLGYLDLRENLDFLFEDQRVSKALGDQWVLQDSKVMAILVCLDLVDYQDPLGRWVYVEWETLEQRESLGSEALQVLLGLGA* | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7465437,7465479 |
| teRNA_15542.69 | COL28A1 | Chimeric | Other | MGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456102,7465437,7465479 |
| teRNA_15542.70 | COL28A1 | Chimeric | Non-coding | Non-coding | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456102,7465437,7465479 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
