TE_15542
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| TE family | L1HS_5end |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Gene | COL28A1, - |
| Class | Chimeric, Intergenic |
| Coding | Non-coding, Other |
| Tumor-specific score | 204.19 |
| Counts of samples | TCGA_tumor:1086; TCGA_normal:5; GTEx:0 |
| TSS | chr7(-):7465478 |
Transcript isoforms
| Transcript_ID | Gene | Class | Coding | ORF | Position |
|---|---|---|---|---|---|
| teRNA_15542.11 | COL28A1 | Chimeric | Other | MISKSSICKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7460867,7461058,7461956,7462108,7462354,7462391,7465092,7465479 |
| teRNA_15542.12 | COL28A1 | Chimeric | Other | MISKSSICKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKG | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7460867,7461058,7461956,7462108,7462354,7462391,7465092,7465479 |
| teRNA_15542.13 | COL28A1 | Chimeric | Other | MFFLLGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7456645,7456731,7462354,7462391,7465092,7465479 |
| teRNA_15542.14 | COL28A1 | Chimeric | Non-coding | Non-coding | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7456645,7456731,7462354,7462391,7465092,7465479 |
| teRNA_15542.15 | COL28A1 | Chimeric | Other | MSSCLDLLLGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7462354,7462387,7465352,7465479 |
| teRNA_15542.16 | COL28A1 | Chimeric | Non-coding | Non-coding | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7462354,7462387,7465352,7465479 |
| teRNA_15542.17 | - | Intergenic | Non-coding | Non-coding | chr7(-):7461038,7461058,7462354,7462387,7465092,7465479 |
| teRNA_15542.18 | COL28A1 | Chimeric | Other | MSSCLDLLLGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7462354,7462387,7465092,7465479 |
| teRNA_15542.19 | COL28A1 | Chimeric | Non-coding | Non-coding | chr7(-):7417907,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7462354,7462387,7465092,7465479 |
| teRNA_15542.20 | COL28A1 | Chimeric | Other | MISKSSICKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGDEGKKGSKGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGDRGGPGIPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTGAKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLPGPPGPPGYGSQGIKGEQGPQGFPGPKGTMGHGLPGQKGEHGERGDVGKKGDKGEIGEPGSPGKQGLQGPKGDLGLTKEEIIKLITEICGCGPKCKETPLELVFVIDSSESVGPENFQIIKNFVKTMADRVALDLATARIGIINYSHKVEKVANLKQFSSKDDFKLAVDNMQYLGEGTYTATALQAANDMFEDARPGVKKVALVITDGQTDSRDKEKLTEVVKNASDTNVEIFVIGVVKKNDPNFEIFHKEMNLIATDPEHVYQFDDFFTLQDTLKQKLFQKICEDFDSYLVQIFGSSSPQPGFGMSGEELSESTPEPQKEISESLSVTRDQDEDDKAPEPTWADDLPATTSSEATTTPRPLLSTPVDGAEDPRCLEA | chr7(-):7358785,7358805,7360390,7360528,7370725,7370882,7372998,7373546,7375461,7375497,7380660,7380695,7380782,7380862,7381544,7381612,7417859,7417927,7419885,7419953,7432473,7432541,7432632,7432700,7436395,7436463,7437394,7437462,7440790,7440861,7443585,7443653,7444418,7444489,7452319,7452387,7453440,7453508,7456044,7456112,7460867,7461058,7462354,7462387,7465092,7465479 |
GTEx
The proportion of samples in which the TE-initiated transcript was expressed across 46 body sites in the Genotype-Tissue Expression (GTEx) project.
TCGA
The proportion of samples in which the TE-initiated transcript was expressed across 33 cancer types from The Cancer Genome Atlas (TCGA).
GTEx
The expression of TE-initiated transcript across 46 body sites from The Genotype-Tissue Expression (GTEx) project.
