MLT1H1

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001015
TE superfamily	MaLR
TE order	LTR
Species	Eutheria
Length	555
Kimura value	26.43
Tau index	0.8608
Description	MLT1H1 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1H1 has 5 bp TSDs, and is intermediate between MLT1G2 and MLT1H. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGATTAAAGATGGCCGCAAATTCTTTGACACTCCTCCCATCGAGAGGTGGGGTCTATNTCCCCTCCCCTTGAATCTGGGCTGGCCTTAGTGACTGCTTTGACCAATAGAATGCGGCGGAAGTGACGCTGTGCGACTTCCGAGGCTAGGTCNTAAGAAGCCTTGCAGCTTCCGCCTNGGTCTCTTGGAACGCTCGCTCTGGGAGCCCTGAGCCGCCATGTAAGAAGTCCGACTACCCTGAGACCGCCATGCTGGAGAGGCCACGTGNAGGCGCTCTGGTCGACAGTCCCAGCTGAGCCCAGCCTTCCAGCCATCCCCGCCAAGGCGCCAGACATGTGAGTGAAGCCGTCTTGGACCCTCCAGACCAGCCCANCCGCCAGCTGAATACCACCGAGTGACCTCAGTCGACGCCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCTGCCCGAATTCCTGACCCACAAAATCGTGAGANATAATAAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTAGTTTGTTACGCAGCAATAGATAACCGGAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1H1	Mnt	265	271	+	14.31	CCACGTG
MLT1H1	Mnt	415	421	+	14.31	CCACGTG
MLT1H1	Mnt	416	422	-	14.31	CCACGTG
MLT1H1	SP2	66	74	-	14.29	GGGGAGGGG
MLT1H1	ERF1B	215	222	+	14.27	AGCCGCCA
MLT1H1	KLF5	65	74	+	14.27	TCCCCTCCCC
MLT1H1	ERF095	211	223	-	14.21	ATGGCGGCTCAGG
MLT1H1	DPBF3	413	423	+	14.16	CGCCACGTGGA
MLT1H1	BHLH72	415	423	-	14.09	TCCACGTGG
MLT1H1	ABF1	413	422	-	14.05	CCACGTGGCG

1 2 3 4 5 6 7 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).