MLT1H1

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001015
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	555
Kimura value	26.43
Tau index	0.8608
Description	MLT1H1 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1H1 has 5 bp TSDs, and is intermediate between MLT1G2 and MLT1H. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGATTAAAGATGGCCGCAAATTCTTTGACACTCCTCCCATCGAGAGGTGGGGTCTATNTCCCCTCCCCTTGAATCTGGGCTGGCCTTAGTGACTGCTTTGACCAATAGAATGCGGCGGAAGTGACGCTGTGCGACTTCCGAGGCTAGGTCNTAAGAAGCCTTGCAGCTTCCGCCTNGGTCTCTTGGAACGCTCGCTCTGGGAGCCCTGAGCCGCCATGTAAGAAGTCCGACTACCCTGAGACCGCCATGCTGGAGAGGCCACGTGNAGGCGCTCTGGTCGACAGTCCCAGCTGAGCCCAGCCTTCCAGCCATCCCCGCCAAGGCGCCAGACATGTGAGTGAAGCCGTCTTGGACCCTCCAGACCAGCCCANCCGCCAGCTGAATACCACCGAGTGACCTCAGTCGACGCCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCTGCCCGAATTCCTGACCCACAAAATCGTGAGANATAATAAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTAGTTTGTTACGCAGCAATAGATAACCGGAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1H1	ERF2	211	223	+	14.76	CCTGAGCCGCCAT
MLT1H1	BZIP68	413	422	+	14.65	CGCCACGTGG
MLT1H1	RAP2-6	116	130	+	14.64	ATGCGGCGGAAGTGA
MLT1H1	PK24205.1	264	271	-	14.62	CACGTGGC
MLT1H1	PK24205.1	414	421	-	14.62	CACGTGGC
MLT1H1	mxl-3	415	422	+	14.59	CCACGTGG
MLT1H1	mxl-3	415	422	-	14.59	CCACGTGG
MLT1H1	ZNF417	328	334	+	14.55	GGCGCCA
MLT1H1	mxl-1	415	422	+	14.33	CCACGTGG
MLT1H1	mxl-1	415	422	-	14.33	CCACGTGG

1 2 3 4 5 6 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).