MLT1H1

Basic information Differential Expression Stage analysis Survival analysis Correlation analysis

DF ID	DF0001015
TE superfamily	MaLR
TE class	LTR
Species	Eutheria
Length	555
Kimura value	26.43
Tau index	0.8608
Description	MLT1H1 Long Terminal Repeat for ERVL-MaLR retrotransposon
Comment	MLT1H1 has 5 bp TSDs, and is intermediate between MLT1G2 and MLT1H. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env).
Sequence	TGTGGTAGATTAAAGATGGCCGCAAATTCTTTGACACTCCTCCCATCGAGAGGTGGGGTCTATNTCCCCTCCCCTTGAATCTGGGCTGGCCTTAGTGACTGCTTTGACCAATAGAATGCGGCGGAAGTGACGCTGTGCGACTTCCGAGGCTAGGTCNTAAGAAGCCTTGCAGCTTCCGCCTNGGTCTCTTGGAACGCTCGCTCTGGGAGCCCTGAGCCGCCATGTAAGAAGTCCGACTACCCTGAGACCGCCATGCTGGAGAGGCCACGTGNAGGCGCTCTGGTCGACAGTCCCAGCTGAGCCCAGCCTTCCAGCCATCCCCGCCAAGGCGCCAGACATGTGAGTGAAGCCGTCTTGGACCCTCCAGACCAGCCCANCCGCCAGCTGAATACCACCGAGTGACCTCAGTCGACGCCACGTGGAGCAGAAGAACCGCCCAGCTGAGCCCTGCCCGAATTCCTGACCCACAAAATCGTGAGANATAATAAAATGGTTGTTGTTTTAAGCCACTAAGTTTTGGGGTAGTTTGTTACGCAGCAATAGATAACCGGAACA

TF motifs of the concenus sequence

Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.

TE_family	TFBS	Start	End	Strand	Score	Matched sequence
MLT1H1	HLH4C	290	303	+	15.44	GTCCCAGCTGAGCC
MLT1H1	MYCN	415	422	+	15.35	CCACGTGG
MLT1H1	MYCN	415	422	-	15.35	CCACGTGG
MLT1H1	NHLH2	289	304	+	15.27	AGTCCCAGCTGAGCCC
MLT1H1	Creb3l2	414	422	+	15.25	GCCACGTGG
MLT1H1	BZIP16	413	422	-	15.20	CCACGTGGCG
MLT1H1	FEZF2	302	309	+	15.03	CCCAGCCT
MLT1H1	ETV7	121	129	+	15.00	GCGGAAGTG
MLT1H1	PIF4	264	271	-	14.80	CACGTGGC
MLT1H1	PIF4	414	421	-	14.80	CACGTGGC

1 2 3 4 5 ... 45

Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.

The promoter activity across 46 body sites from The Genotype-Tissue Expression (GTEx) project.

The promoter activity across 33 cancer types from The Cancer Genome Atlas (TCGA).