MLT1A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0001126 |
|---|---|
| TE superfamily | MaLR |
| TE class | LTR |
| Species | Boreoeutheria |
| Length | 374 |
| Kimura value | 20.59 |
| Tau index | 0.9038 |
| Description | MLT1A Long Terminal Repeat for ERVL-MaLR retrotransposon |
| Comment | MLT1A (Mammalian LTR Transposon) has 5 bp TSDs. This is an intermediate subfamily between MSTD and MLT1C. Note that a full-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element is derived from an ERV (Endogenous Retrovirus), but only contains the Gag gene (that is, no Pol or Env). |
| Sequence |
TGCTATGGACTGAATGTTTGTGTCCCCCCAAAATTCATATGTTGAAGCCCTAACCCCCAATGTGATGGTATTTGGAGGTGGGGCCTTTGGGAGGTAATTAGGNTTAGATGAGGTCATGAGGGTGGGGCCCTCATGATGGGATTAGTGCCCTTATAAAAGAGACACCAGAGAGCTCTCTTNCCCCTTCCGCCATGTGAGGACACAGCGAGAAGGCGCCGTCTGCAAGCCAGGAAGAGAGCCCTCACCAGAAACCGAATCTGCCGGCACCTTGATCTTGGACTTCCCAGCCTCCAGAACTGTGAGAAATAAATTTCTGTTGTTTAAGCCACCCAGTCTATGGTATTTTGTTATGGCAGCCCGAGCNGACTAAGACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MLT1A | RFX3 | 343 | 358 | - | -0.16 | GGCTGCCATAACAAAA |
| MLT1A | E2F7 | 20 | 33 | + | -0.41 | GTGTCCCCCCAAAA |
| MLT1A | CG4360 | 339 | 351 | - | -0.46 | ATAACAAAATACC |
| MLT1A | ZAP1 | 53 | 67 | + | -2.08 | ACCCCCAATGTGATG |
| MLT1A | Rarg | 110 | 124 | + | -2.36 | GAGGTCATGAGGGTG |
| MLT1A | Nr2F6 | 110 | 124 | + | -5.17 | GAGGTCATGAGGGTG |
| MLT1A | Rarb | 109 | 124 | + | -6.02 | TGAGGTCATGAGGGTG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
