MER61B
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000884 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 427 |
| Kimura value | 12.39 |
| Tau index | 0.9979 |
| Description | MER61B Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | MER61B has 4 bp TSDs. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGATAGAGACAGGAGGCAGCCAAGGGTCCCCGGCGAAACCCCGCCTTCAAGCCTAAAACAGCCTGAAGGCTGAAAAACCGGACTGCTGGTCCCGGATGAAGCCCGCCCTTTCCCGACTGATTCTTTCTGAATAATGCCCACCTGCGCACTGGGAGGACGGGGTGGAGCCTCGGGAAGTTCGCGCCGTTTGCAGNGGGGAGGAGCCTGGCCTCTCCTGTTCCTGTGTGGTGACCTGGGATTCAATCTGTGAGGTGGGAGGCCTGTTAGCAGGACCCCCTCTCGCTTTGCTGAGAGTTNTTTTTCCTTTTTCCTTTTCGCCCAATAAATTCCGTTCTCCTCACCCTTCAATGTGTCCGCGNGCCTAATCTTTCCTGGTCGTGTGACAAGAACCCGGTTTTAGCTGAACTAAGGAGAAAGTTCTGCAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER61B | NRG1 | 22 | 29 | + | 14.66 | AAGGGTCC |
| MER61B | KLF15 | 101 | 108 | + | 14.65 | GCCCGCCC |
| MER61B | DOF3.6 | 300 | 320 | + | 14.52 | TTTCCTTTTTCCTTTTCGCCC |
| MER61B | DOF1.7 | 299 | 309 | - | 14.41 | AAAAAGGAAAA |
| MER61B | SP1 | 195 | 203 | + | 14.40 | GGGGAGGAG |
| MER61B | SP4 | 195 | 203 | + | 14.38 | GGGGAGGAG |
| MER61B | Hoxa13 | 319 | 326 | + | 14.02 | CCAATAAA |
| MER61B | ZNF263 | 151 | 157 | + | 13.83 | GGGAGGA |
| MER61B | ZNF263 | 196 | 202 | + | 13.83 | GGGAGGA |
| MER61B | PI | 299 | 312 | - | 13.76 | AGGAAAAAGGAAAA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
