MER61A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000883 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 341 |
| Kimura value | 12.14 |
| Tau index | 0.8268 |
| Description | MER61A Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | An earlier reconstruction name MER61 was refined and renamed MER61A. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGAGACAGCCAGGTGGGAGGGGGTCCCCGGAGAAACTCCAACCGGCCTGCGCACTGGGAGGAGTGCGCACTGGGGTGGAGCCNCGGAAGTTCGCGCCGTTTGCAGCGGGGAGGAGCCTGGCCCCTCCTCTTCCTGTGTGGAACCTGGGATTCAANCTGCGAGGCGGGAAGCGCNCTAGCAGGGACTCTGGCCTTGCGGAGAGTCCCTGTTTCCCCTTTTTTTCCTTTTCACCCAATAAAACCCTGCCTTACTCACCCTTCAAATCGTCTGCGAGCCTAAATTTTCGTGGCCGTGGGACAAGGACCCCGTCTTTAGCTGAACTAAGGAAAAGTCCTGCAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER61A | Ikzf3 | 127 | 135 | - | 13.37 | CAGGAAGAG |
| MER61A | Spi1 | 126 | 138 | - | 13.36 | ACACAGGAAGAGG |
| MER61A | UGA3 | 162 | 168 | + | 13.34 | GGCGGGA |
| MER61A | ZNF75A | 291 | 302 | - | 13.33 | CCTTGTCCCACG |
| MER61A | FLI1::FOXI1 | 129 | 139 | - | 13.21 | CACACAGGAAG |
| MER61A | KLF1 | 15 | 22 | + | 13.17 | GGGAGGGG |
| MER61A | kn | 24 | 33 | + | 13.17 | TCCCCGGAGA |
| MER61A | PK19717.1 | 19 | 27 | - | 13.16 | GGGACCCCC |
| MER61A | ETV2::FOXI1 | 128 | 138 | - | 13.14 | ACACAGGAAGA |
| MER61A | SP2 | 160 | 168 | + | 13.12 | GAGGCGGGA |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
