MER61A
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000883 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Haplorrhini |
| Length | 341 |
| Kimura value | 12.14 |
| Tau index | 0.8268 |
| Description | MER61A Long Terminal Repeat for ERV1 endogenous retrovirus |
| Comment | An earlier reconstruction name MER61 was refined and renamed MER61A. Note that MER stands for MEdium Reiteration frequency interspersed repeat. As such, MERs as a group are a grab bag of DNA transposons and retrotransposons. |
| Sequence |
TGAGACAGCCAGGTGGGAGGGGGTCCCCGGAGAAACTCCAACCGGCCTGCGCACTGGGAGGAGTGCGCACTGGGGTGGAGCCNCGGAAGTTCGCGCCGTTTGCAGCGGGGAGGAGCCTGGCCCCTCCTCTTCCTGTGTGGAACCTGGGATTCAANCTGCGAGGCGGGAAGCGCNCTAGCAGGGACTCTGGCCTTGCGGAGAGTCCCTGTTTCCCCTTTTTTTCCTTTTCACCCAATAAAACCCTGCCTTACTCACCCTTCAAATCGTCTGCGAGCCTAAATTTTCGTGGCCGTGGGACAAGGACCCCGTCTTTAGCTGAACTAAGGAAAAGTCCTGCAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| MER61A | BPC1 | 205 | 228 | - | -0.23 | AAAAGGAAAAAAAGGGGAAACAGG |
| MER61A | BPC1 | 210 | 233 | - | -0.76 | GGGTGAAAAGGAAAAAAAGGGGAA |
| MER61A | BPC1 | 208 | 231 | - | -1.21 | GTGAAAAGGAAAAAAAGGGGAAAC |
| MER61A | BPC1 | 214 | 237 | - | -1.71 | TATTGGGTGAAAAGGAAAAAAAGG |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
