LTR12E
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000404 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Hominoidea |
| Length | 1322 |
| Kimura value | 6.49 |
| Tau index | 0.9390 |
| Description | LTR12E (Long Terminal Repeat) for HERV9-like endogenous retrovirus |
| Comment | Another subfamily obtained primarily by variation of the R66-like minisatellite. |
| Sequence |
TGAGAGGTGACAGCGTGCTGGCAGCCCTCGCAGCCCTCGCTCGCTCTCGGCGCCTCCTCGGCCTCGGCGCCCACTCTGGCCGCGCTTGAGGAGCCCTTCAGCCCGCCGCTGCACTGTGGGAGCCCCTCTCTGGGCTGGCCGAGGCCGGAGCCGGCTCCCTCNGCTTGCGGGGAGGTGTGGAGGGAGAGGCGCGGGCGGGAACCGGGGCTGCGCGCGGCGCTCGCGGGCCAGCGCGAGTTCCGGGTGGGCGCGGGCTCGGCGGGCCCCGCACTCGGAGCGGCCGGCCGGCCCCGCCGGCCCCGGGCAGTGAGGGGCTTAGCACCCGGGCCAGCGGCTGCGGAGGGTGCGCCGGGTCCCCCAGCAGTGCCGGCCCGCCGGCGCCGCGCTCGANTTCTCGCCGGGCCTCAGCCGCCTCCCCGCGGGGCAGGGCTCGGGACCTGCAGCCCGCCATGCCTGAGCCTCCCACCCNCTCCGTGGGCTCCTGCGCGGCCCGAGCCTCCCCGACGAGCGCCGCCCCCTGCTCCGCGGCGCCCGGTCCCATCGACCGCCCAAGGGCTGAGGAGTGCGGGCGCACGGCGCGGGACTGGCGGGCAGCTCCACCCGCGGCCCCGGTGCGGGATCCACTGGGTGAAGCCAGCTGGGCTCCTGAGTCTGGTGGGGACTTGGAGAACCTTTATGTCTAGCTAAGGGATTGTAAATACACCAATCGGCACTCTGTGTCTAGCTCAAGGTTTGTAAACGCACCAATCAGCACCCTGTGTCTAGCTCAGGGTTTGTGAATGCACCAATCGGCGCTCTGTATCTAGCTAATCTGGTGGGGACTTGGAGAACCTTTGTGTCNANGNNCTGTANCGNACCAATCNGNCGGGGNCGCGNAGNACCTCTGTGTCTAGCTCAGGGATTGTAAACGCACCAATCAGCGCCCTGTCAAAACGGACCAATCGGCTCTCTGTAAAATGGACCAATCAGCAGGATGTGGGTGGGGCCAGATAAGAGAATAAAAGCAGGCTGCCCGAGCCAGCAGCGGCAACCCGCTCGGGTCCCCTTCCACGCTGTGGAAGCTTTGTTCTTTCGCTCTTTGCAATAAATCTTGCTGCTGCTCACTCTTTGGGTCCGCGCTGCCTTTATGAGCTGTAACACTCACCGCGAAGGTCTGCAGCTTCACTCCTGAAGCCAGCGAGACCACGAACCCACCGGGAGGAACGAACAACTCCGGACGCGCCGCCTTTAAGAGCTGTAACACTCACCGCGAGGGTCCGCGGCTTCATTCTTGAAGTCCAGCGAGACCAAGAACCCACCAGAAGGAAGAAACTCCGGACACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR12E | GLIS1 | 492 | 506 | + | -6.98 | CGAGCCTCCCCGACG |
| LTR12E | DAL81 | 184 | 202 | + | -25.74 | GAGAGGCGCGGGCGGGAAC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
