LTR10F
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000397 |
|---|---|
| TE superfamily | ERV1 |
| TE class | LTR |
| Species | Catarrhini |
| Length | 511 |
| Kimura value | 6.02 |
| Tau index | 0.8392 |
| Description | LTR10F (Long Terminal Repeat) for HERVIP10F endogenous retrovirus |
| Comment | LTR10F is a long terminal repeat of the HERVIP10F endogenous retrovirus. Its very close subfamily flanks also the HERVIP10FH non-autonomous retrovirus. |
| Sequence |
TGTTAGATATGAGTTCTAAATTTCTCTTCAAAGAATCAATATGTCAGTATGTTCAATTCTTTGCCTTCTACTTTTAAACTTAACTTCCTCGTAAAGCAACCTTTTTCGATTACCTGCTCCACCCTGACTCATTCCGATTACCTGCTCCACCCTGACTCATTCCGATTACCTGCCACCTGCTCCGCCCTGACTCATTCATTCTCCGCCCTGCATAACCATTTTTNNNNCCCGCCAAACCACTCACCCCGTCACTCTCTTTAAATTAGCCAATCGGAATTAGTTTAGCCTGTGCGGTCTAACCCTAGCCAATAGGGGAACGACACAGCAGCAGGGGCCACGTGCGTCAGGGATAAGAACCCCTTCCCCTCCCTTGTCCAAGTGTGCGCTCACCATTGCTCCATCTGTAAGGGCGCACCCTTCTATAGAAGTANCTTGCCTTGCTGAGAATTAAAAAGAAAATTTTATATTCGAGTGCTATTTCTTTTGCGGCACCGAAACTTTATNTATAACA
|
TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| LTR10F | HEY2 | 334 | 342 | + | 14.52 | GCCACGTGC |
| LTR10F | AZF1 | 450 | 458 | + | 14.41 | AAAAAGAAA |
| LTR10F | Jun | 125 | 132 | + | 14.31 | TGACTCAT |
| LTR10F | Jun | 153 | 160 | + | 14.31 | TGACTCAT |
| LTR10F | Jun | 188 | 195 | + | 14.31 | TGACTCAT |
| LTR10F | Mnt | 335 | 341 | + | 14.31 | CCACGTG |
| LTR10F | PK03576.1 | 336 | 342 | + | 14.20 | CACGTGC |
| LTR10F | FOS | 125 | 132 | + | 14.19 | TGACTCAT |
| LTR10F | FOS | 153 | 160 | + | 14.19 | TGACTCAT |
| LTR10F | FOS | 188 | 195 | + | 14.19 | TGACTCAT |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
