L1PBa1_5end
Basic information Differential Expression Stage analysis Survival analysis Correlation analysis| DF ID | DF0000351 |
|---|---|
| TE superfamily | L1 |
| TE class | LINE |
| Species | Simiiformes |
| Length | 1592 |
| Kimura value | 10.18 |
| Tau index | 0.9413 |
| Description | 5' end of L1 retrotransposon, L1PBa1_5end subfamily |
| Comment | - |
| Sequence |
GGGGATCATGGCGGACGGGAGGCAGGACTAGATTGCAGCTCCGGACAGAGCAGCGTGCGGAGGCTCGCATCGTGAATTTTAGCTCCAGANCGACTGCAAGAACAAACCAGCAATCCCGAGAGGACCCACAGACCCTCTGAAGGAAGCGGACTGCTCCTGCAGGACCCGGGAGACACCCCAAATACTGTGAGTGCCCCAACTGCGGAAGTGGGAAAGGGAGACCCTCCTCTCCCGAACACACACCCCCACTGGAGAAGCTGAAGGTCTGTTTGCGGGAGAAGTTTCCGACCTTACCTGGAGCTGAGTCAATTTAGAGAGCCGAGCGAAATACAGGGGTAGAGGAAGCAGCAGAAAGGCCCTGGGAGCTCGCTGGGTCCCCAAGCAGGCCATTCCTGCCTGGCACCACAGGGATCCNTCGGGAGGGCGGCCAGAGGAGCAGGGGGTAAAACNCCACAGGGAGAAGGAAATCTCCAGCTGAACTTTGTAACAATTTGAACCGGGCGAGAAGCCTCCTGGCCAGAACTCGGGGGAGGGCGCGAATCCGGCGTGCAGACTCCACAGGCGGGGGAAGAACCAAAGCCCTTTTCTTTCGCAGCTGGGAGGCGGGTAGCCTGGGGCAAGTTCTCAAGCCCGNCTCGCCCNCCGCCTGGAAACAGACTCGGGGCTGTTGGGGGGGGCACGGTGGGAGTGAGACCGGCCCTTCGGTTTGCGTGGGAGCTGGGTGAGGCCTGTGACTGCCGGCTTTCCCCCACTTCCCTGACAACCTGCATGACTCAGCAGAGGCAGCCATAATCCTCCTAGGTACACAACTCCANTGACCTGGGAACCTCACCCCCATCCCCCACAGCAGCCGCAGCAAGACCCGCCCAAGGAGAGTCTGAGCTCAGACACGCCTAGCCCCGCCCCCACCTGATGGTCCTTCCCTACCCACCCTGGTAGCNGAAGACAAAGGGCATATAATCTTGGGAGTTCTAGGGCCCCGCCCACCGCCGGTTCCTCTCCATACTACCACAGCTGATGCTCTCTGGAAAGCGCCACCTCCTGGCAGGAGGCCAACCAGCACAAAAATAGAGCATTAAACCACCAAAGCTAAGAACCCTCACGGAGTCCATTNCACCCCCCGCCACCTCCACCGGAACAGGCGCTGGTATCCACGGCTGAGAGACCCATAGACGGTTCACATCACAGGACTCTGTGCAGACAACCCCCAGTACCAGCCCGGAGCCGGGTAGACTCGCTGGGTGGCTAGACCCAGAAGAGAGACAACAATCACTGCAGTTCGGCTCACAGGAAGCCACATCCATAGGAAAAGGGGGAGAGTACTACATCAAGGGAACACCCCGTGGGACAAAAGAATCTGAACAACAGCCTTCAGCCCTAGACCTTCCCTCTGACAGAGCCTACCCAAATGAGAAGGAACCAGAAAACCAACCCTGGTAATATGACAAAACAAGGCTCTTTAACACCCCCCAAAAATCACACTAGCTCACCAGCAATGGATCCAAACCAAGAAGAAATCCCTGATTTACCTGAAAAAGAATTCAGGAGGTTAGTTATTAAGCTAATCAGGGAGGCACCAGAGAAAGGCGAAG
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TF motifs of the concenus sequence
Use FIMO to detect transcription factor motifs in the concenus sequence of the TE family.
| TE_family | TFBS | Start | End | Strand | Score | Matched sequence |
|---|---|---|---|---|---|---|
| L1PBa1_5end | GFI1 | 1267 | 1277 | + | 17.74 | CAATCACTGCA |
| L1PBa1_5end | DREB2G | 1121 | 1134 | - | 17.67 | GGTGGAGGTGGCGG |
| L1PBa1_5end | Mafg | 768 | 779 | + | 17.66 | CATGACTCAGCA |
| L1PBa1_5end | SP2 | 898 | 906 | - | 17.56 | GGGGCGGGG |
| L1PBa1_5end | SP4 | 898 | 906 | - | 17.54 | GGGGCGGGG |
| L1PBa1_5end | CG3065 | 977 | 987 | + | 17.44 | GCCCCGCCCAC |
| L1PBa1_5end | CG3065 | 897 | 907 | + | 17.29 | GCCCCGCCCCC |
| L1PBa1_5end | KLF14 | 898 | 906 | - | 17.26 | GGGGCGGGG |
| L1PBa1_5end | NFIX | 1043 | 1056 | - | 17.11 | TTGGCCTCCTGCCA |
| L1PBa1_5end | KLF5 | 897 | 906 | + | 17.00 | GCCCCGCCCC |
TFBS enrichment in GRCh38
Use Fisher's exact test to perform enrichment analysis of transcription factor binding sites in the TE family of GRCh38.
